Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01607 ATGGTTATGGAAGAAGAGCAAAGCAATAGCAATAGCAATAGCATAGAAGGAGGTGCTTCGCTACCATCGGGTCCAGACGCAAAGAAGAGAAGGGTCACATACTTCTACGAACCCAGCATCGGCGATTACTACTATGGACAAGGCCACCCCATGAAACCCCACCGGATCCGAATGGCTCACAATCTCATCGTTCACTACTCCCTCCACCGCCGCATGGAGATTAACCGTCCCTTCCCCGCCACCGACGAAGACATCCGCCGCTTCCACTCCGACGACTACGTCCACTTCCTCTCCTCCGTCTCCCCCGAGACCCTCGCCGAGTCCACCTTCTCCCGCCAGCTCAAACGCTTCAACGTCGGTGAGGACTGTCCTGTCTTCGACGGCCTCTTCAATTTCTGCCAGGCCTCCGCCGGCGGCTCTATCGGCGCCGCCGTCAAACTCAACCGCGGTGACGCCGATATCGCCATCAATTGGGCCGGCGGCTTGCACCATGCCAAGAAGTCTGAAGCTTCTGGTTTCTGTTACGTCAACGACATTGTTCTTGGTATCCTCGAGCTTCTCAAAGTTCACAGGCGTGTGCTGTATGTTGACATTGATGTTCACCATGGTGATGGTGTTGAGGAGGCCTTTTACACAACTGATAGAGTGATGACAGTGTCTTTTCATAAATTTGGGGACTTTTTCCCAGGCACTGGACACATTAAAGACATTGGGGTGGGCTCAGGAAAGAACTATGCTCTCAATGTCCCATTAAATGATGGAATGGATGATGAGACTTTCCGTGTTCTGTTCCGAGCAGTCATTCAAAAAGTCATGGAGGTTTATCAACCCGATGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGATAGGTTGGGTTGCTTCAACTTGTCTGTCAAAGGTCATGCAGATTGCCTTCGTTTCATTAGATCTTTCAATGTTCCTCTGATGGTCTTGGGTGGGGGAGGATATACAATCCGGAATGTGGCTCGTTGTTGGTGTTATGAGACAGCAGTAGCAGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAGTATTTTGGCCCAGATTATACTCTCTATGTTGACCCAAGCAACATGGAGAACCTAAACACACCCAAGGATTTGGAAAGAATAAGGAACAAATTACTAGAACAGATTTCTCGAATTCCCCATGCTCCCAGTGCACCTTTTCAGATGACACCATCAACCTTAGAAGTTCCGGAAGAGCCGGAAGAGGACATGGATAGAAGACCAAAACGTCGCAAATGGAGTGGTGAAGATTATGATTCTGATTACGATGAAGATGAAAAGCGCAATTCTAAACGCACAAACTCCACTGACCATATGAGGGATGTTGCAGATGACATGGAAGAAGAGAAGCCAGCAGTGCATCCATCATCCTGA 1425 0.4849 MVMEEEQSNSNSNSIEGGASLPSGPDAKKRRVTYFYEPSIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPATDEDIRRFHSDDYVHFLSSVSPETLAESTFSRQLKRFNVGEDCPVFDGLFNFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGSGKNYALNVPLNDGMDDETFRVLFRAVIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFIRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTPKDLERIRNKLLEQISRIPHAPSAPFQMTPSTLEVPEEPEEDMDRRPKRRKWSGEDYDSDYDEDEKRNSKRTNSTDHMRDVADDMEEEKPAVHPSS. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01607 474 Gene3D Histone deacetylase domain 28 403 IPR037138 -
Seca12g01607 474 MobiDBLite consensus disorder prediction 417 474 - -
Seca12g01607 474 PRINTS Histone deacetylase signature 84 102 IPR003084 GO:0004407|GO:0016575
Seca12g01607 474 PRINTS Histone deacetylase signature 117 134 IPR003084 GO:0004407|GO:0016575
Seca12g01607 474 PRINTS Histone deacetylase signature 138 158 IPR003084 GO:0004407|GO:0016575
Seca12g01607 474 PRINTS Histone deacetylase signature 51 68 IPR003084 GO:0004407|GO:0016575
Seca12g01607 474 PRINTS Histone deacetylase signature 179 195 IPR003084 GO:0004407|GO:0016575
Seca12g01607 474 PRINTS Histone deacetylase signature 238 251 IPR003084 GO:0004407|GO:0016575
Seca12g01607 474 PRINTS Histone deacetylase signature 255 273 IPR003084 GO:0004407|GO:0016575
Seca12g01607 474 CDD HDAC_classI 35 342 - -
Seca12g01607 474 MobiDBLite consensus disorder prediction 396 474 - -
Seca12g01607 474 MobiDBLite consensus disorder prediction 1 19 - -
Seca12g01607 474 SUPERFAMILY Arginase/deacetylase 30 394 IPR023696 -
Seca12g01607 474 PIRSF HDAC_I_euk 5 471 IPR003084 GO:0004407|GO:0016575
Seca12g01607 474 Pfam Histone deacetylase domain 49 340 IPR023801 -
Seca12g01607 474 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g01607 474 FunFam Histone deacetylase 28 407 - -
Seca12g01607 474 PANTHER HISTONE DEACETYLASE 2-RELATED 8 356 - -
Seca12g01607 474 PRINTS Histone deacetylase superfamily signature 192 207 IPR000286 -
Seca12g01607 474 PRINTS Histone deacetylase superfamily signature 277 287 IPR000286 -
Seca12g01607 474 PRINTS Histone deacetylase superfamily signature 160 183 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01607 Seca-Chr12 17361129 17365823 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01607 K06067 - gmx:100807923 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01607 12 17361129 17365823 Seca12g01607 12 17361129 17365823 ECH