Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01589 ATGTCATCAGCAACAAGGGATCACAGGATTGTTCGCCGAATGACAAGCCTTCCTCGAAGCATAATGGGGGGTATTTCAAGGGCAATGGGGGATGGTATGGGGTTTGTGGGAATAGGAAGAAGAAGAAATCAACATACAAATTTTCCACTACAGCCTCAAAGCCCTTTACTACAACAGGATCCCCTGTTAGTTCCAGAGGAGTGGACTTTTCTAGAAAGCTTTGAGCAACAATATGGCACCAAACATCCTTTCTTTTATGCTTGCCGTTTCATGGAAGCTATGAGGTTAACACAGCAAGATCAAAAGTTCATGTTCATGTACCTTCACTCACCAGACCACCCTTTTGCAAATGTTTTCTGCAAGGATACCCTGTGTTCAGAGCTAGTGATCCAGTTTCTTGATGTGAATTTTATTTGCTGGGGAGCACTTGCAGATAGAGGAGAGGGTCTGCAAATGGTTGCATCATTAAGACCTGATAGCTTTCCATGTTGTGCTGTCATAAGCCCTGCTCCTAGTGATAGTATAGTAGTGCTGCAACAGCTGGAGGGACCACTTTCACCAGCTGAACTAGTGGAGATTCTACAAAGAACATTGGAAGAGCAAGGGGTGGCTTTTGGAAGTGCTAAAGCTAAGCAAGAAGAAAAGATGCGAGCAGATCGTAGGCTTAGAGAAGAACAAGATGCTGCATATCTTGCAGCTTTGCAAATAGACAAGGAAAAAGAGAGACTCAAAAATTTACCTTCAAGAGAGAGAATTCAGAAGCCAGTGGAAGCTCAGAACACAAGAAATTATGGGAAGCTGAGGAACAATCATGTCAATGTCAGTAAACAGCATAATAAAACAAATGAGTCCACTAGTGAAAAGCAAGACAAGGGAATTGGAAATAGGGGAAGTGGGTCTCAGGCCACACAGATACTCATAAGGTTTCCAAATGGGGAAAGAAGAGAACATACCTTCTTGTGCACAGACAAAATCCAGTCCATTTTTTCATACATAGATTCATTAGGTTTGCCAGGGATTGAGAACTACAGATTGATATCAAACTTCCCAAGAAAAGCTTATGGTGTTGATCAAATGAGAATGACTCTCAAAGATGCTGGCTTGTATCCTAAAGCTAGCTTGTTCCTGGAGCCATTGTGA 1140 0.4237 MSSATRDHRIVRRMTSLPRSIMGGISRAMGDGMGFVGIGRRRNQHTNFPLQPQSPLLQQDPLLVPEEWTFLESFEQQYGTKHPFFYACRFMEAMRLTQQDQKFMFMYLHSPDHPFANVFCKDTLCSELVIQFLDVNFICWGALADRGEGLQMVASLRPDSFPCCAVISPAPSDSIVVLQQLEGPLSPAELVEILQRTLEEQGVAFGSAKAKQEEKMRADRRLREEQDAAYLAALQIDKEKERLKNLPSRERIQKPVEAQNTRNYGKLRNNHVNVSKQHNKTNESTSEKQDKGIGNRGSGSQATQILIRFPNGERREHTFLCTDKIQSIFSYIDSLGLPGIENYRLISNFPRKAYGVDQMRMTLKDAGLYPKASLFLEPL. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01589 379 MobiDBLite consensus disorder prediction 257 280 - -
Seca12g01589 379 Pfam UBX domain 300 377 IPR001012 GO:0005515
Seca12g01589 379 Gene3D Glutaredoxin 68 203 - -
Seca12g01589 379 MobiDBLite consensus disorder prediction 256 301 - -
Seca12g01589 379 PANTHER FAS-ASSOCIATED PROTEIN 8 377 - -
Seca12g01589 379 CDD UAS 90 200 - -
Seca12g01589 379 SUPERFAMILY Thioredoxin-like 64 203 IPR036249 -
Seca12g01589 379 ProSiteProfiles UBX domain profile. 298 376 IPR001012 GO:0005515
Seca12g01589 379 Coils Coil 208 228 - -
Seca12g01589 379 SMART ubx_3 294 378 IPR001012 GO:0005515
Seca12g01589 379 SMART 45neu3 69 195 IPR006577 -
Seca12g01589 379 Gene3D - 298 378 - -
Seca12g01589 379 CDD UBX 305 377 - -
Seca12g01589 379 SUPERFAMILY Ubiquitin-like 296 378 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01589 Seca-Chr12 17128378 17130818 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01589 K18726 - gmx:100775212 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01589 12 17128378 17130818 Seca12g01589 12 17128378 17130818 ECH