Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01585 ATGGCGATGAAGAAGGGAAGGGCATTGAGCGTGGCAGTCAACGCTCTGTGTTTGGTTATGGTTTGCAGTGCGATCGATTCTCCACAGTTCACAGTAGTACACTCCGAATCCGATTTCGAGATCAGACTCTATCGAAGCTCCGTTTGGATGTCCGCTCCTGCTCTTGACATCTCCTTCGAGAAAGCCACATGGAATGGCTTCCACAGGTTGTTCCAGTTCATACAAGGTGCGAATCTGAATTTCTCTCGAATTCCAATGACTGCTCCAATATTGACAACCATGGTCCCTGGAGCTGGCCCCCTTCAATCCCAAGGCTATTATGTTAGTCTCTACTTGCCTGTTAAGTTCCAAGCAACCCCACCACTCCCACTTCCAGAACTCAACATAAAGCCCTACGAGTTCAGCAGCCACTGCGTTGCGGTCAGAAAGTTTTCTGGATTTGCCAAGGATGACAGGGTTGTCAAAGAGGCAGAAAAGCTTGCTACAAGCTTGAGCAGGTCTCCCTGGGCTGATTCAATTTCGTCCAAGAGTCAAGGTGCTTACTCAATTGCACAGTACAATACTCCATTCAGGATTGCTAAGCGCAAAAATGAGGTTTGGGTGGACATTGATGCTCCTGAATTGGGTTGTAAGTTGGTTGATGTTGCAGCATATTGA 657 0.4764 MAMKKGRALSVAVNALCLVMVCSAIDSPQFTVVHSESDFEIRLYRSSVWMSAPALDISFEKATWNGFHRLFQFIQGANLNFSRIPMTAPILTTMVPGAGPLQSQGYYVSLYLPVKFQATPPLPLPELNIKPYEFSSHCVAVRKFSGFAKDDRVVKEAEKLATSLSRSPWADSISSKSQGAYSIAQYNTPFRIAKRKNEVWVDIDAPELGCKLVDVAAY. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01585 218 Gene3D Regulatory factor, effector binding domain 24 208 IPR011256 -
Seca12g01585 218 FunFam Heme-binding protein 2 25 208 - -
Seca12g01585 218 PANTHER HEME-BINDING PROTEIN-RELATED 20 202 IPR006917 -
Seca12g01585 218 Pfam SOUL heme-binding protein 26 201 IPR006917 -
Seca12g01585 218 SUPERFAMILY Probable bacterial effector-binding domain 16 203 IPR011256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01585 Seca-Chr12 17104861 17107051 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01585 - - gmx:100306073 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01585 12 17104861 17107051 Seca12g01585 12 17104861 17107051 ECH