Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01573 ATGGCGAACGCAAGCGACGCCGGCGCCGAAGCCCTACGGCGTCTGAAAGCGACGGATCCACCGTCATGGCTGGCACCGAACTCATCACTGTCTGAAACTGCTCGTGCTGCATCGCAGTACCTGTTCTCCTCCCTCAGACCCTTCTCCCAAAAATCGCCATTGGACCACCTCCTCGTCGACGGCTTCGACGCCGAGCAGATATGGCAGCAAATTGACCTCCAATCTCAGCCTCTGTTGTCCACCCTTCGCCGCCGGTTGAAGCAGTTGGCCAAAAACCCTCAAGAGATTTCTCAGCTGAAGGTTCCTTCGGAAGGTGGGAACAAAGCTGAGACAAAGAAACGAAAGGAGTGGGACGAAGAAAGCGATGGTTTTGACGAGGGATTGGATGAAGTTGATGAAGACGAGGATGAAGAAATGGTAGAAAAGGAGGAGAGAAAAGGAGAAGAGGAAGATGAAGAGGAGGGGGAAGAAGATGGAGAGGAGGGGGAAGAAGATGGAGAGGAGGGAGAAGAAGAAGAATCAGGGGACGAGGATGAAGATGAGGAGAAGGGCGAGGAGAGCGAGGAGGAGAAGGGTGAAGGTGGTGGTATTGAGGATAAATTCTTGAAAATAGATGAATTGGCTGAGTACTTACAGAAGGAGGAAGAGAATATGGAGAATGGTGAGGCAGAAAGGAAAGGTGAAGAGGAAGATGACGATGACCAAGACACTGAAGATGATGAGGAAAGTGATGAGGCTGGTGATTTTGGGATGGGTGACGATGATGATGAAGATGAAGAAGCAGAGGACATGGAAAATGCAAGGTATGAAGACTTCTTTGGAGGAAAAAAGGAAAAGGGCTCAAAAAGAAAAACTCAATTGCTTCAGGAATCTGAAGATTCTGGTGATGAAGATGACACGGAATTTGACAAACAGAAGAAAGGGGCTGCTTCTACCCATGAAAAGGAACTAAAAAAAATTCAATCAGAGATAGAGCAGATGGAGAAGGCTAACATAGAGCCAAAAACATGGACTATGCAGGGTGAGGTAACTGCTGCAAAGAGACCCAAGAATAGTGCATTGGAAGTTGATCTTGACTTTGAGCACAATGTGAGACCTGCTCCAGTAATCACTGAGGAGGTTACAGCTTCAATTGAGGATATGATCCGCAAAAGGATTACTGAGGGGTATTTTAATGATGTTCAAAGGACTCCTAAGTTGCCATCTAAAGCACCTCGGGAAGTTAAAGAGTTGGATGACAATAAAAGCAAGCAGGGTCTTGCAGAAATTTACGAGCAAGAATATGTTCAGAAGACAGACCCCACTTCTGCTCCATTGTCATTCAAAGATGAACAAAAGAATGAGGCAAGCATGCTGTTCAAGAGACTCTGTCTGAAGCTGGATGCCCTTTCTCACTTTAACTTTGCTCCAAAACCTGTTATAGAGGATATGTCTTTTCAAGCTAATGTGCCTGCTCTGGCAATGGAAGAAATTGCACCTGTGGCCATTTCAGATGCTGCTATGCTGGCTCCTGAGGAGGTCTTTGACGGTAAGGGTGATATGAAGGAAGAAGCAGAGCTTACAAAGGAAGAAAGGAAAAGGCGGAGAGCTAATAAGAAAAGAAAATTTAAAGCTGAGGTAGCAAAAAGGACAGAAAAGAAGGCGCGAGAGGGTGCAGTTCCTAGCCAAGTTAATGGCTAA 1680 0.4631 MANASDAGAEALRRLKATDPPSWLAPNSSLSETARAASQYLFSSLRPFSQKSPLDHLLVDGFDAEQIWQQIDLQSQPLLSTLRRRLKQLAKNPQEISQLKVPSEGGNKAETKKRKEWDEESDGFDEGLDEVDEDEDEEMVEKEERKGEEEDEEEGEEDGEEGEEDGEEGEEEESGDEDEDEEKGEESEEEKGEGGGIEDKFLKIDELAEYLQKEEENMENGEAERKGEEEDDDDQDTEDDEESDEAGDFGMGDDDDEDEEAEDMENARYEDFFGGKKEKGSKRKTQLLQESEDSGDEDDTEFDKQKKGAASTHEKELKKIQSEIEQMEKANIEPKTWTMQGEVTAAKRPKNSALEVDLDFEHNVRPAPVITEEVTASIEDMIRKRITEGYFNDVQRTPKLPSKAPREVKELDDNKSKQGLAEIYEQEYVQKTDPTSAPLSFKDEQKNEASMLFKRLCLKLDALSHFNFAPKPVIEDMSFQANVPALAMEEIAPVAISDAAMLAPEEVFDGKGDMKEEAELTKEERKRRRANKKRKFKAEVAKRTEKKAREGAVPSQVNG. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01573 559 PIRSF snoRNP_Mpp10 1 556 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Seca12g01573 559 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 5 549 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Seca12g01573 559 MobiDBLite consensus disorder prediction 267 291 - -
Seca12g01573 559 Coils Coil 515 535 - -
Seca12g01573 559 Pfam Mpp10 protein 49 543 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Seca12g01573 559 MobiDBLite consensus disorder prediction 90 318 - -
Seca12g01573 559 MobiDBLite consensus disorder prediction 122 188 - -
Seca12g01573 559 MobiDBLite consensus disorder prediction 225 266 - -
Seca12g01573 559 MobiDBLite consensus disorder prediction 300 318 - -
Seca12g01573 559 MobiDBLite consensus disorder prediction 510 526 - -
Seca12g01573 559 Coils Coil 204 231 - -
Seca12g01573 559 Coils Coil 310 333 - -
Seca12g01573 559 MobiDBLite consensus disorder prediction 510 559 - -
Seca12g01573 559 MobiDBLite consensus disorder prediction 106 121 - -
Seca12g01573 559 MobiDBLite consensus disorder prediction 189 224 - -
Seca12g01573 559 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01573 Seca-Chr12 16940797 16947907 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01573 K14559 - gmx:100781093 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01573 12 16940797 16947907 Seca12g01573 12 16940797 16947907 ECH