Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01535 ATGGCCCCCGCGACCTACGGAGGAGGCCGTGAAGACGGCAGCGGTGGCCGGGGGAGACAGAGGCCTGTGGCGGCGGGGACTAAAAGGGAGGTGATGGCGAAGAAGGTGGCGCTAGGGTTCCGGTTGAGCGAGGTGGTGCTGTGTCTGATTTCGTTTTCGGTGATGGCCGCGGATAAGACACAAGGTTGGAGTGGTGACTCCTTTGATCGCTACAAAGAATACAGGTATTGTTTATCTGTGAATGTTATAGCGTTTGCATATGCAGCGTTTCAAGCGTGTGATCTAGCCTTTCAACTGGTCATGGGGAGAAACATAATCAATCACCACCTCCGCTATCACTTTGATTTCTTCATGGATCAGGCAAGTCAGAGGGCTCCATTCAATTTATTCAGTTCAATTCATTATCTCTACACAAGATTTTTTAATTTATAA 432 0.4907 MAPATYGGGREDGSGGRGRQRPVAAGTKREVMAKKVALGFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNVIAFAYAAFQACDLAFQLVMGRNIINHHLRYHFDFFMDQASQRAPFNLFSSIHYLYTRFFNL. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01535 143 Pfam Casparian strip membrane protein domain 33 121 IPR006702 -
Seca12g01535 143 PANTHER CASP-LIKE PROTEIN 4A4 23 121 - -
Seca12g01535 143 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01535 Seca-Chr12 16128303 16129522 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01535 - - lja:Lj4g3v1512520.1 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01535 12 16128303 16129522 Seca12g01535 12 16128303 16129522 ECH
Seca12g01535 12 16128303 16129522 Seca12g01535 12 16128303 16129522 PCT