Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01514 ATGCAGCGATCCTCTCCTACTCCTACCATCACTGTCTTCGCTCTCTTCCTCATTGTGATCCTGCCCCATGTTCAGATTGTGCAGGGACTTTCACTGTCTCCATTTGCAACGGCTCTCGAAACCCTCCAGAAGCAACTAGGGTACACCTTCAAGAGCATTAGTCTTCTTCGTCGTGCCATGACCCACGCTTCCTTCTCTGAGGAAAACAACAAAGCTTTCAGCATCTTAGGTGGCAGTGTCATCGAAACATCGCTTTCTTTCCACTTGCTCTCCAAAGACATTGATCTCTCAGCGAAAGAGCTCAACCGTCGATTATCGCAAGTCACCAACGTGGAATCTTCCTGTGCCGTGGATGGAATGCGCTTGGGCTTGCACAAGGTGGTTCGAGTTTCCCCCAAGACCAATTCTTCTGCACCTGCTGTGGTTTGTGGTGCGTTTCGAGCAATCTTTGGTGCTATTGCTATTGATACTGGCAAATCAGATGACGCGGGTAACATTTTCTGGACCCTTCATGGTGGTGATCTTGGGGTTGCCCTTGCACTGTGA 546 0.4963 MQRSSPTPTITVFALFLIVILPHVQIVQGLSLSPFATALETLQKQLGYTFKSISLLRRAMTHASFSEENNKAFSILGGSVIETSLSFHLLSKDIDLSAKELNRRLSQVTNVESSCAVDGMRLGLHKVVRVSPKTNSSAPAVVCGAFRAIFGAIAIDTGKSDDAGNIFWTLHGGDLGVALAL. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01514 181 SMART riboneu5 54 180 IPR000999 GO:0004525|GO:0006396
Seca12g01514 181 Gene3D Ribonuclease III domain 37 172 IPR036389 GO:0004525|GO:0006396
Seca12g01514 181 FunFam Protein NUCLEAR FUSION DEFECTIVE 2 37 173 - -
Seca12g01514 181 Pfam Ribonuclease-III-like 54 160 IPR000999 GO:0004525|GO:0006396
Seca12g01514 181 PANTHER RIBONUCLEASE III 31 159 IPR011907 GO:0003723|GO:0004525|GO:0006364
Seca12g01514 181 CDD RIBOc 54 161 IPR000999 GO:0004525|GO:0006396
Seca12g01514 181 ProSiteProfiles Ribonuclease III family domain profile. 39 158 IPR000999 GO:0004525|GO:0006396
Seca12g01514 181 SUPERFAMILY RNase III domain-like 34 163 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01514 Seca-Chr12 15392825 15397196 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01514 - - gmx:100527745 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01514 12 15392825 15397196 Seca12g01514 12 15392825 15397196 ECH