Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01512 ATGCCGATTCCGAGTTCGGACTCACCCACCGTTCGGGTGTTCAACATACCTCAATGTGTCACCGCCAAAGACCTCCTTGACTTTCTGGAATTGACGGTGGGTCCTTCCTCCGTCTTCGCCCTCGAAATCTTCAGTGATTTCTCCAACTGGAAGTCTCGTGGTTCAGGTCGCGTCCAATTCGAGACATTCGAAGCTAAGTCACGTGCCCTCTCTCTCTCCCTCGCCGGCAAACTCCTCCTCAAGTCTCACTACCTTCGCCTCTCCGAAACCTTCGACGACATCATCCCCAGGCCTCCTCTCCCCAAAAACCGCGTCGACAATGGCGACCTTCACGCCGGTTTCTTGCTCGCCCCTGACCGCATGAGTGTTCTGGAAACATGGGAAGGCATCAGAGGTTGGGTCATGCCTGAAAGGAGGAGACTTGACTTCTGGGTCTGGCATGCTGGTGAGTGTTTCAGGCTTGAGATTCTCTTTGAAGATATTTTGGAGTCTAATGGGTATTGTTCCCAACATGGCAAAGTCGATGCCCTCCTTTTGCAGCTGAAATATGGACCAAGGATCTATCAGAGAAAAGCAGGGCCTAATGTAGAGGCAAAGTTTAAGGCTGATAGGTATCGTTATTGTAAGCAGGATTTTGAGTTTCTTTGGGTGCGTACCACTGACTTCTCATCTTCAAAGTCAATTGGGCACTCTACTTCATTTTGTTGGGAAATTGGGGGAGAAGACTCTGTTGCTTCGGATATTTTTCAAAGTTTCCCTCTCTACAGAGAAAATTTGAAAGATGTAATTCTGGAGGATGGGAAAGAATTCTGTTCTCCAACGGAAACTGTTCCACTTGTGAAGTGTGATTCACATTCTAATCTGCCTTATGAGACACTTTTTCAATTGAACTCCCTTGTTCATACCCAGAAGATTAGTTTTGCCTCGGTGAATGATGACTTGATTGAGTTATTAGGAAGCTTAGATGAAGAAACTAAAGCCATGGTTTTTCAGAAATTGCACAAGCTGAATTTCACTTGTTATGAGCCTCTGAAATTTGTGAAGACTCAATTGATTGTGCTAAGTAACACGAGGAGAAGTTTGGTGTCTTCAAAGCAGAAAAGATTGGAAGATAATAACATAATGAGTTGTCATAGAGCATTGATTACCCCATCAAAGATTTATTGCCTCGGTCCTGAGCTTGAAACTTCGAATCATGTGGTAAAGCATTTTGCATCATATGCTTCGGATTTCATGAGAGTTACTTTTGTTGAAGAGAATTGGAATAAGCTACCAGCTAATGCAGTATCAACTAGTGTTCAAAAGGGAATCTTTGCAAAGCCTTTTAAAACTGAAATATATAATCGGATCTTGACTATTCTTCGAGATGGGATTGTAATTGGATCAAAAAGATTTGAGTTTCTAGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTATTTGCTTCTAATGACAATGTGAAAGCAGCAGATATCAGAGAATGGATGGGGTGCTTCAACAATATTCACAGTGTTTCTAAATGTGCAGCAAGGATGGGTCAGCTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGTCCCTTCAAGATGTGGATTTCATTCCAGATATTGAAGTTACCTATGATTTTGTAAGCTACTGTTTTTCAGACGGTATTGGAAAAATTTCCCAATCTTTTGCAAGGCAAGTTGCACAAAAGTTAAAGTTGGATCCGAGTCGAATTCCATCTGCATTTCAAATTCGGTATGGTGGATATAAAGGTGTCATTGCTGTTGATCGCCAGTCCTTTAGGAAGTTATCATTGCGTAGCAGCATGCTTAAGTTTGAATCCAACAACAGGATGCTTTGCATCACTAAATGCAGTGAATCAATGCCTTGCTTTCTCAACCGAGAGATTATATCCCTGCTGTCTACCTTAGGAGTGAAAGATGAGGCGTTTTTGGCAATGCAACAGAAACAATTGCATTTACTAGAAAGGATGTTGACTGATAGTGCAGCAGCTTTGGATGTTTTGGAAAGTTTAAGTGGAGCTGATTCAAAAAGCATTCTAGTGAAGATGTTGCATGGATTTTATGAACCAAACAGTGAACCTTACCTATCAATGATGCTTAAGGCTCATTACACATACCAATTATCTGATTTGAAAAGTAGGTGCCGAATATTTGTCCCCAAGGGTCGAGTCTTGCTAGGTTGCTTGGATGAATCTGGTATTTTGAATTATGGCCAAGTATTTGTCCGCATAACTGTGAAAAAAAATGAGAAATTTGGAGATGAAAGCTTAAGGAAACCGGATGGCGATGATAGCACACGTATAATAGTGGGGAAGGTGGTGGTCACAAAAAATCCTTGCCTTCACCCAGGAGACATCAGAGTCCTTGATGCTGTCTATAATGAAGAATTAGATGAAAAGAGTTTGACGGATTGCCTTGTTTTTCCACAAAAAGGACCTAGGTATGTATATAATGGCCTAGATTTACCGATGCATTTGATTGCAATCTTTTGTTTTATTCAAGCTGCTAATATTTGTTGGGCTTACAGGCCACATCCAAATGAATGCTCTGGAGGTGATCTTGATGGAGATTTATTTTTCATAAGCTGGGACAAAGATCTGATCCCATGTCAAACCGATGATCCAATGGACTACACAGGAAGGAGGCCTCGTATAATGGACCATGTGGTGACCCTAGAGGAAATCCAACGATTTTTTGTTGATTACATGATCAATGATACTTTGGGTGCTATCTCCACTGCACATCTAGTTCATGCTGACCGTGAACCAGATAAGGCCAGGAGTAGAAAATGTCTGGAGTTGGCACAGCTTCATTCCATGGCTGTTGACTTTGCAAAGACTGGAGCACCTGCTGAAATGCCTAGAGCCTTGAAACCAAGAGAGTTTCCAGATTTCATGGAGAGGTGGGACAAACCTATGTATATCTCCAATGGGGTACTAGGAAAACTTTATCATGCCATAGTTGAAACAAATTTGCAAGTAATGTCTAACTCTGTCTGGTCTGAAGAAGCATATGACCATAATCTTGAAGCTAATGGTTTTGAGGCCTTCCTTGAGACTGCATCAAGTCACAAAGAAAAGTATACAGAGAAGATGAGTGCTTTAATGAACTTCTATGGTGCAGAAACTGAGGATGAAATGCTAACAGGTAATTTGCAAAACCGTGCTTCATATTTGCAGCGTGATAACAGAAGATATGCAGATATGAAAGATCGGATTTTGCTCTCAGTAAAGGACCTTCAGCGTGAAGCTAAAGAATGGTTTGAAACTGATTGTCAACCTAATGAATATCAACGTATGGCATCTGCATGGTATCATGTGACCTATCACCCGGGATATTACCAGGAAAGCTCCAGTTTTTTAAGCTTTCCATGGATAGTTGGTGACATTTTATTGCATATTAAGTCTATGAACAGTAGGGTTCAAAGTTGA 3444 0.4146 MPIPSSDSPTVRVFNIPQCVTAKDLLDFLELTVGPSSVFALEIFSDFSNWKSRGSGRVQFETFEAKSRALSLSLAGKLLLKSHYLRLSETFDDIIPRPPLPKNRVDNGDLHAGFLLAPDRMSVLETWEGIRGWVMPERRRLDFWVWHAGECFRLEILFEDILESNGYCSQHGKVDALLLQLKYGPRIYQRKAGPNVEAKFKADRYRYCKQDFEFLWVRTTDFSSSKSIGHSTSFCWEIGGEDSVASDIFQSFPLYRENLKDVILEDGKEFCSPTETVPLVKCDSHSNLPYETLFQLNSLVHTQKISFASVNDDLIELLGSLDEETKAMVFQKLHKLNFTCYEPLKFVKTQLIVLSNTRRSLVSSKQKRLEDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFASYASDFMRVTFVEENWNKLPANAVSTSVQKGIFAKPFKTEIYNRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNVKAADIREWMGCFNNIHSVSKCAARMGQLFSSSMQTFEVSLQDVDFIPDIEVTYDFVSYCFSDGIGKISQSFARQVAQKLKLDPSRIPSAFQIRYGGYKGVIAVDRQSFRKLSLRSSMLKFESNNRMLCITKCSESMPCFLNREIISLLSTLGVKDEAFLAMQQKQLHLLERMLTDSAAALDVLESLSGADSKSILVKMLHGFYEPNSEPYLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLLGCLDESGILNYGQVFVRITVKKNEKFGDESLRKPDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAVYNEELDEKSLTDCLVFPQKGPRYVYNGLDLPMHLIAIFCFIQAANICWAYRPHPNECSGGDLDGDLFFISWDKDLIPCQTDDPMDYTGRRPRIMDHVVTLEEIQRFFVDYMINDTLGAISTAHLVHADREPDKARSRKCLELAQLHSMAVDFAKTGAPAEMPRALKPREFPDFMERWDKPMYISNGVLGKLYHAIVETNLQVMSNSVWSEEAYDHNLEANGFEAFLETASSHKEKYTEKMSALMNFYGAETEDEMLTGNLQNRASYLQRDNRRYADMKDRILLSVKDLQREAKEWFETDCQPNEYQRMASAWYHVTYHPGYYQESSSFLSFPWIVGDILLHIKSMNSRVQS. 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01512 1147 Pfam RNA dependent RNA polymerase 382 991 IPR007855 GO:0003968
Seca12g01512 1147 PANTHER RNA-DEPENDENT RNA POLYMERASE 9 1139 IPR007855 GO:0003968
Seca12g01512 1147 SUPERFAMILY RNA-binding domain, RBD 4 91 IPR035979 GO:0003676
Seca12g01512 1147 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 92 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01512 Seca-Chr12 15380559 15385970 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01512 K11699 - gmx:100808274 1757.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01512 12 15380559 15385970 Seca12g01512 12 15380559 15385970 ECH