Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01509 ATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAATTGATGATGAGTGATTATACAGTGGAGACAATAAATGATGGACTCAATGAATTTAATGTGGAGTTTCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGAGTCTGGAAAATTCGTGTTGAGCTTCCTGATGCCTATCCATACAAATCCCCTTCTATCGGCTTTGTGAACAAAATATTCCACCCAAATGTTGATGAGTTATCTGGCTCTGTATGCTTGGATGTCATTAACCAATCATGGAGTCCAATGTTCGATCTCCTAAATGTCTTTGAAGTTTTTCTTCCACAACTCTTGCTTTATCCAAATGCTTCAGATCCTCTCAATGGCGATGCAGCATCCTTAATGATGAAGGATAAAAAGCTGTATGACCAAAAAGTTAAAGGTGATCATATTGTTTATTATGGGCTACTTTTTCTGATAATTTAA 465 0.3677 MSSPSKRREMDVMKLMMSDYTVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDQKVKGDHIVYYGLLFLII. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01509 154 SUPERFAMILY UBC-like 4 143 IPR016135 -
Seca12g01509 154 FunFam Ubiquitin-conjugating enzyme 5, E2 1 148 - -
Seca12g01509 154 SMART ubc_7 4 148 - -
Seca12g01509 154 CDD UBCc 7 140 IPR000608 -
Seca12g01509 154 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Seca12g01509 154 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Seca12g01509 154 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 135 - -
Seca12g01509 154 Pfam Ubiquitin-conjugating enzyme 11 140 IPR000608 -
Seca12g01509 154 Gene3D Ubiquitin Conjugating Enzyme 1 146 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01509 Seca-Chr12 15363505 15370237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01509 3 117 Miscellaneous Gene Families AT3G17000 23.577 2.31e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01509 K10576 - gmx:100790685 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01509 12 15363505 15370237 Seca12g01509 12 15363505 15370237 ECH