Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01506 ATGGGAGATAACAAACGTAAGAGAGGACGCAAACCCAAAACTCCCACCTCGGAAACCCTAGACTTCCCCGCCACCGCCCCCCCTAACACCACCGCCGCCCCTAACACCAACCCTTCCACCATGGACGATGTCTTCTCCGTCGGCAACGTCGAACTCATTGATAATGCTGCCTCTCCCCACCTCCGTCCCCGCCGTGGACGATCCAACAAGCTCCCCACCCACTCTGACAAGTCCCTCTCTCTTGCCACTGGCCGCCGCCTTACTCGTCCCGTTGACAGCAGTGGCGACGTAATGATTCTCGGTGAAGTCGGGGGTGCCACTGCCATGGAAGCAGACCCTGTGTGGGAGAGCGTATCGGCGAGGGTGTTGCCAGCGATGGACTCGGTGGTGAAGGTGTTCTGTGTGCACACAGAGCCGAATTTTTCTTTGCCATGGCAGAGGAAGAGGCAATACAGCTCTAGTAGCAGTGGTTTTGTGATTGGTGGCAGGAGGGTGCTCACCAATGCACATTCTGTTGAGCACTACACCCAGGTCAAGCTCAAGAAACGTGGCTCCGATACTAAGTATTTGGCCACTGTCCTTGCCATTGGAACCGAGTGCGACATCGCCATGCTTACAGTGGATGATGATGAGTTCTGGGAAGGGATGTCACCTGTAGATTTTGGGGATTTGCCCACACTTCAAGATGCAGTCACTGTTGTGGGTTATCCAATTGGTGGAGACACCATCTCTGTGACCAGTGGTGTTGTATCACGCATTGAGATTCTATCTTATGTCCATGGTTCCACCGAACTTCTAGGTTTACAGATAGATGCTGCTATAAATTCTGGCAATTCTGGTGGGCCTGCATTTAATGATAAAGGAAACTGTGTTGGGATTGCATTTCAGTCCCTCAAACATGAAGATGTGGAGAATATAGGTTATGTCATTCCGACACCAGTTATCATGCATTTCATCCAGGATTATGAGAAGAACGGAGGATATACTGGTAATATGACTTTTCTTTCTCTGCTGTTAGGGTTCCCTATTCTTGGGGTTGAGTGGCAGAAAATGGAAAATCCTGATCTACGAATGGCAATGGGCATGAGACCTGATCAGAAAGGTGTGCGTATTAGAAGAATTGATCCTACTGCTCCTGAATCTAAGGTTTTGAAACCATCAGATGTTATCCTTAGCTTTGATGGGGTTGATATTGCCAATGATGGAACAGTTCCATTTCGTCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCCCAGAAATATACTGGTGATAACGCTGTAATCAAAGTATTACGGAATTCAGATGTTTTCAAGTTTGATGTTAAACTTGGTAGTCACAGAAGGCTCATTCCAGCACACAGCAAGGGCAAGCCTCCCTCATATTATATTATTGGAGGATTTGTTTTTACAACTGTTTCGGTTCCTTATCTTCGATCTGAGTATGGAAAGGATTATGAGTATGAAGCTCCAGTCAAGCTTTTGGATAAACTGCTGCATTCAATGCCACAATCACCAGATGAACAGCTTGTTGTGGTCTCTCAGGTGCTGGTGGCTGATATCAACATTGGATATGAAGAAATTGTTAACACTCAGGTCCTTGCTTTCAATGGCAAACCTGTGAAAAATCTTAAGAGCTTGGCCACTATGGTAGAGAGCTGTGATGATGAATATCTAAAATTTGATCTAGATTATGATCAGATAGTGGTCCTTCGAATGAAGACTGCAAAAGCAGCTACTCTAGATATTCTTGCAACACACTGCATTCCATCAGCAATGTCCGATGATCTTAAGTCTTGA 1800 0.4639 MGDNKRKRGRKPKTPTSETLDFPATAPPNTTAAPNTNPSTMDDVFSVGNVELIDNAASPHLRPRRGRSNKLPTHSDKSLSLATGRRLTRPVDSSGDVMILGEVGGATAMEADPVWESVSARVLPAMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWEGMSPVDFGDLPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEKNGGYTGNMTFLSLLLGFPILGVEWQKMENPDLRMAMGMRPDQKGVRIRRIDPTAPESKVLKPSDVILSFDGVDIANDGTVPFRHGERIGFSYLISQKYTGDNAVIKVLRNSDVFKFDVKLGSHRRLIPAHSKGKPPSYYIIGGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEEIVNTQVLAFNGKPVKNLKSLATMVESCDDEYLKFDLDYDQIVVLRMKTAKAATLDILATHCIPSAMSDDLKS. 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01506 599 Gene3D - 213 324 IPR043504 -
Seca12g01506 599 MobiDBLite consensus disorder prediction 1 42 - -
Seca12g01506 599 SUPERFAMILY PDZ domain-like 367 449 IPR036034 GO:0005515
Seca12g01506 599 PANTHER - 55 597 - -
Seca12g01506 599 MobiDBLite consensus disorder prediction 18 42 - -
Seca12g01506 599 FunFam Protease Do-like 9 105 212 - -
Seca12g01506 599 PRINTS HtrA/DegQ protease family signature 157 169 IPR001940 GO:0004252|GO:0006508
Seca12g01506 599 PRINTS HtrA/DegQ protease family signature 227 251 IPR001940 GO:0004252|GO:0006508
Seca12g01506 599 PRINTS HtrA/DegQ protease family signature 185 205 IPR001940 GO:0004252|GO:0006508
Seca12g01506 599 PRINTS HtrA/DegQ protease family signature 264 281 IPR001940 GO:0004252|GO:0006508
Seca12g01506 599 PRINTS HtrA/DegQ protease family signature 383 395 IPR001940 GO:0004252|GO:0006508
Seca12g01506 599 SUPERFAMILY Trypsin-like serine proteases 120 326 IPR009003 -
Seca12g01506 599 CDD PDZ_serine_protease 342 442 - -
Seca12g01506 599 Pfam PDZ domain 344 444 IPR001478 GO:0005515
Seca12g01506 599 FunFam protease Do-like 9 214 324 - -
Seca12g01506 599 Pfam Trypsin-like peptidase domain 156 293 - -
Seca12g01506 599 Gene3D - 450 599 IPR046449 -
Seca12g01506 599 Gene3D - 341 449 IPR036034 GO:0005515
Seca12g01506 599 Gene3D - 106 212 IPR043504 -
Seca12g01506 599 Pfam PDZ domain 451 596 IPR041517 -
Seca12g01506 599 MobiDBLite consensus disorder prediction 55 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01506 Seca-Chr12 15340134 15348536 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01506 K25897 - gmx:100817187 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01506 12 15340134 15348536 Seca12g01506 12 15340134 15348536 ECH