Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01502 ATGGCTGCAACTGCTTCAAGGTTCATCAAGTGTGTGACCGTTGGTGATGGAGCTGTAGGGAAAACCTGCATGCTCATTTGCTATACAAGCAACAAATTCCCCATGGACTATGTTCCAACGGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAGGCACAACTGTCAATTTAGGCCTATGGGACACTGCTGGGCAAGAGGACTACAACAGGCTCAGGCCTTTGAGCTACAGAGGGGCAGATGTCTTTGTCTTGGCTTTCTCTTTAGTTAGTAGTGCAAGCTATGAGAATGTGTTGAAGAAGTGGATCCCTGAACTCCAGCATTTTGCTCCTGGTGTCCCAGTGGTGCTAGTTGGCACCAAATTGGATCTCCGAGAAGACAAGCACTATTTGGCTGATCATCCTGGTCTGGTGCCAGTGACTTCTGAGCAAGTACAATATCTTACTTTATTATCTGCATGCAGAATTCCATAG 474 0.4578 MAATASRFIKCVTVGDGAVGKTCMLICYTSNKFPMDYVPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSSASYENVLKKWIPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLVPVTSEQVQYLTLLSACRIP. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01502 157 SMART ras_sub_4 6 157 - -
Seca12g01502 157 Gene3D - 2 154 IPR027417 -
Seca12g01502 157 CDD Rop_like 8 144 - -
Seca12g01502 157 PANTHER RHO FAMILY GTPASE 6 147 IPR003578 GO:0005525|GO:0007264
Seca12g01502 157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 145 IPR027417 -
Seca12g01502 157 PRINTS Transforming protein P21 ras signature 111 124 - -
Seca12g01502 157 PRINTS Transforming protein P21 ras signature 32 48 - -
Seca12g01502 157 PRINTS Transforming protein P21 ras signature 9 30 - -
Seca12g01502 157 PRINTS Transforming protein P21 ras signature 49 71 - -
Seca12g01502 157 FunFam Rho family GTPase 6 152 - -
Seca12g01502 157 ProSiteProfiles small GTPase Rab1 family profile. 4 157 - -
Seca12g01502 157 ProSiteProfiles small GTPase Rho family profile. 2 157 - -
Seca12g01502 157 ProSiteProfiles small GTPase Ras family profile. 4 157 IPR001806 GO:0003924|GO:0005525
Seca12g01502 157 SMART rho_sub_3 11 153 IPR001806 GO:0003924|GO:0005525
Seca12g01502 157 Pfam Ras family 10 128 IPR001806 GO:0003924|GO:0005525
Seca12g01502 157 SMART rab_sub_5 9 153 - -
Seca12g01502 157 NCBIfam small GTP-binding protein domain 9 130 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01502 Seca-Chr12 15292892 15297324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01502 7 143 EF-hand Containing Proteins AT5G27540 21.898 3.91e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01502 K04392 - gmx:100806681 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01502 12 15292892 15297324 Seca12g01502 12 15292892 15297324 ECH