Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01493 ATGGAAAAGAGGCGCAAAAGGAAGCAGCAGGTGGAGCGTGACGAAGAGCCAAACCCAAAGTCGAAGTCTGTTCGTGTGGGTCCAAGCCAAACCGAGAACCTCAAGGACCCATTCCCATCTCACAGTCGACCCACCCCACAAGAATGCCAAGACGTACGAGACACTCTCTTAGCCCTCCACGGTCTTCCCCCAGAACTCGCCAAGTACCGCAAACTCCAACCAACCGATGACACCCTCCAACCGGACCCACCGGAAACCGTTCTCGACGGTTTGGTCCGAACCGTGCTCTCGCAGAACACCACAGAAACCAATTCACAGAGGGCATTCGCTAACCTCAAATCCACCTTCCCTACTTGGGAACATGTGCTTGGTGCTGAGTCCAAGGATTTGGAGAATGCGATTCGTTGCGGAGGTTTAGCCCCAACTAAGGCTTCCTGTATTAAGAACATGTTGCGTTGCTTGCTTGAGAGAAGAGGCAAATTGTGCTTGGAGTATTTGCGTGACATGTCCACCGATGAAATTAAGGCTGAGCTTTCTCTTTTCAAAGGAATTGGTCCCAAAACAGTGGCTTGTGTATTGATGTTCAATCTTCAGCAAGATGATTTTCCTGTGGACACTCACATATTTGAGATTGCAAAAACCATTGGTTGGGTACCAGCTGTTGCAGACAGAAATAAGACATATCTTCATCTAAACCAAAGGATCCCAGATGAACTTAAGTTTGACTTGAATTGTCTTCTGTATACTCACGGGAAGATCTGCCGTAAATGTTCCAGTAAAAAGGCATACAACACAGTGCAATGTCAAGATTGTCATATTCTCTTGCAGCATGATGAACTAAAACCTCTCACTAAAAGTTACACTGATTCCCTGAGTGAGCTGGGAAATTTGAAGCTTGAACACTTACCTCAGGATTACAATGGCTCTGCCCTTACGCTTATTGAATCACTGTCTAGCCTTGTTATTATGGGCAACAATACTGAATTCGAGAGGGCAATACTCTGGCTTTCAGAAAATCTAACATTTGATGTTGATGCACGCATAAATCTTTTTGAGTGCAACATCAGAGTTCTTGGAGGACTTGTCTCTGCTCATTTACTTGCATCTGATTCTTCAAAGAAGTTGTTTCATGGAGCTTACAAGAATCAGCTGCTAGTTTTGGCTGAGGATTTAGGGAAACGCTTTCTACCAGCATTCAATACACCCACTGGATTGCCATATGCGTGGATTAACTTGAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTGATACTTGAAATGGGTGCTTTATCAAAAATGACCGGTGACCCTAGATATGAATCAGTAGCTTTACGAGCTCTTCGTAAGCTATGGAGTATGCAGAGTTCATTAAAATTATTTGGAACCACTCTGGATGTAGCAACTGGGCAATGGATTGAATATTCTTCAGGCATTGGAGCTGGGGTTGATTCCTTCTACGAGTATCTACTTAAAGCCCATATCCTTTTCGGAAAGGAGGACTTTTGGAAAATGTTTCACTCTGCTTATATTGCCGTGCAGAAATATTTCAGACATGGTCCTTGGTATCATGAAGCTGATATGAGGACAGGAAGAGCAACTTATTGGCAGCTTACAAGTCTTCAAGCATTTTGGCCTGGTCTACAGGTTCTTATTGGGGATATATTTGCTGCCAATTCATCTCACCGTGAGTTCTTCTATGTGTGGAAGAAATTTGGAGTGCTACCAGAGAGGTATTTGCTGGACCATCAGATGATTCATCCTACTGAAAAATATTATCCATTACGCCCTGAATTTGCTGAGTCAACATTCTACTTATATCAAGCTACTAAAGATCCATGGTATATTGAAGTCGGTGAATCAATAGTCAATTCCCTTAATTTATACACCAAAGTAGAGGGTGGGTTTGCAAGCATCAAAGATGTGACAACTATGCAGTTGGAAGATCATCAACATAGTTTTTTTCTTGCTGAAACGTGCAAATATTTATATCTTCTATTTGATGATTCATTTATTCATGAGAATAATTACATATTTACCACCGAAGGTCATCCCCTTCCAGTATTAAGCACTTGGCATGAAGAGCTTCCAGAAACTTATATTCCAACTAATTGGACTATCATTAAGAGACAACCAGCAGCAAATCGAGTCAGTGCAATGTCTTTGCAAGTATGTCCTGCTATGACTTTAAATTCAGGTCAACATATAGAGAGTGCTTGCCACATCCCCGATGCTCGTAGTGATTACAGGTGCTTGACTGATGAAGATTGTGGAGTTGATGCCACTACATGCAGAAGAAGATCATGTAGCATGGCTGGTTATTGTGGGCTATGGCTCTTCATATGA 2370 0.4257 MEKRRKRKQQVERDEEPNPKSKSVRVGPSQTENLKDPFPSHSRPTPQECQDVRDTLLALHGLPPELAKYRKLQPTDDTLQPDPPETVLDGLVRTVLSQNTTETNSQRAFANLKSTFPTWEHVLGAESKDLENAIRCGGLAPTKASCIKNMLRCLLERRGKLCLEYLRDMSTDEIKAELSLFKGIGPKTVACVLMFNLQQDDFPVDTHIFEIAKTIGWVPAVADRNKTYLHLNQRIPDELKFDLNCLLYTHGKICRKCSSKKAYNTVQCQDCHILLQHDELKPLTKSYTDSLSELGNLKLEHLPQDYNGSALTLIESLSSLVIMGNNTEFERAILWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSSKKLFHGAYKNQLLVLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKMTGDPRYESVALRALRKLWSMQSSLKLFGTTLDVATGQWIEYSSGIGAGVDSFYEYLLKAHILFGKEDFWKMFHSAYIAVQKYFRHGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLIGDIFAANSSHREFFYVWKKFGVLPERYLLDHQMIHPTEKYYPLRPEFAESTFYLYQATKDPWYIEVGESIVNSLNLYTKVEGGFASIKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFIHENNYIFTTEGHPLPVLSTWHEELPETYIPTNWTIIKRQPAANRVSAMSLQVCPAMTLNSGQHIESACHIPDARSDYRCLTDEDCGVDATTCRRRSCSMAGYCGLWLFI. 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01493 789 Pfam Glycosyl hydrolase family 47 276 695 IPR001382 GO:0004571|GO:0005509|GO:0016020
Seca12g01493 789 Gene3D Hypothetical protein; domain 2 82 203 - -
Seca12g01493 789 PRINTS Glycosyl hydrolase family 47 signature 310 324 IPR001382 GO:0004571|GO:0005509|GO:0016020
Seca12g01493 789 PRINTS Glycosyl hydrolase family 47 signature 602 626 IPR001382 GO:0004571|GO:0005509|GO:0016020
Seca12g01493 789 PRINTS Glycosyl hydrolase family 47 signature 488 505 IPR001382 GO:0004571|GO:0005509|GO:0016020
Seca12g01493 789 PRINTS Glycosyl hydrolase family 47 signature 347 365 IPR001382 GO:0004571|GO:0005509|GO:0016020
Seca12g01493 789 PRINTS Glycosyl hydrolase family 47 signature 397 416 IPR001382 GO:0004571|GO:0005509|GO:0016020
Seca12g01493 789 PRINTS Glycosyl hydrolase family 47 signature 661 681 IPR001382 GO:0004571|GO:0005509|GO:0016020
Seca12g01493 789 PRINTS Glycosyl hydrolase family 47 signature 545 561 IPR001382 GO:0004571|GO:0005509|GO:0016020
Seca12g01493 789 SMART endo3end 96 253 IPR003265 GO:0006284
Seca12g01493 789 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g01493 789 Gene3D - 204 256 IPR023170 -
Seca12g01493 789 Pfam HhH-GPD superfamily base excision DNA repair protein 92 235 IPR003265 GO:0006284
Seca12g01493 789 MobiDBLite consensus disorder prediction 1 48 - -
Seca12g01493 789 CDD ENDO3c 91 251 IPR003265 GO:0006284
Seca12g01493 789 MobiDBLite consensus disorder prediction 23 46 - -
Seca12g01493 789 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 277 706 IPR044674 GO:0004571|GO:1904380|GO:1904382
Seca12g01493 789 SUPERFAMILY DNA-glycosylase 79 271 IPR011257 GO:0003824|GO:0006281
Seca12g01493 789 SUPERFAMILY Seven-hairpin glycosidases 276 709 IPR036026 GO:0004571|GO:0005509|GO:0016020
Seca12g01493 789 Gene3D - 275 706 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01493 Seca-Chr12 15175683 15192472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01493 277 786 Glycoside Hydrolase AT1G27520 78.558 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01493 K10084 - gmx:100793674 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01493 12 15175683 15192472 Seca12g01493 12 15175683 15192472 ECH