Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01482 ATGGTTTCCGATTCAATCGCCGCTGCTCCTATTCCTTCCGCTGCAAACACTAAGAACCCAGGCAAGAAGAAGAGGACCAACAGGTCCGCAAAATTGAAGCAGTATAAGATTGATGCGCGTCGCGAGCAATGGCTATCTCAAGGTGCGGTGAAGAACAAAGGGTGCAAGGACGGAGTGGACGATGATGGCCACGCGCCGCCGTCGCCGGTTGGGAAACATGAGAAGCGCTCGTTGGAGCAACTGGAGACGAGGCGTAGAGGTGAAGAGGACGATGGGTCACTCCATCAGGACAGCGATTCGGAATCGCCGACTAACAGTCCCACCAGTCCTAATGGCGTCTTGTGTGGCAATGATTCCGGCACAAATTTCACCGGCAGCAGCAGTAGCGGCGGCGGAAGCAGCAGCAGCAGCAGTTCTAGCTGTGCTGGATGCTGCTCGGGGAATATCACCGAAGAGGACGAAGAAGAAGAAGAAGAAGAAGGTGATGATGAATGCTTGGATGATTGGGAGACTATGGCAGATGCTATAGCCGCCGATGACAAGCACCAAAACTCTTGTTTGGATTCGCCCCCTTCGCATGATGAACCTGCTGTGGAAACGGATTCGCCTCGTGAAGTGAGTAACGGGTCGAATTTATCATCTCCCAGTTCCAAACTCGCGAGTGCTAGATTGCTTCCTTGGGCCTCTGGTAATAGCCGAGCTTGGAGGGCTGATGATGCTTTTCGACCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCGAACCCTGACCGGCGTTTTGGAGGAGGGCTCCCCTGGTCTCGTACTTCTACGCCGTCGTCATGTCCAATATGCTGCGAGGATCTTGATTTGACGGACTCGAGTTTTTTGCCGTGCCTGTGTGGGTTTAGGCTTTGCCTCTTTTGCCACAAGAGGATTCTTGAGGAGGATGGCCGTTGTCCTGGGTGTAGGAAGCCTTATGAGTGTGAACCTGTTGAGACAGAGGCAAGTGTGCTTGGAGGCAGCCTGACTCTTCGGTTGGCTCGTTCGTGTAGCATGATCGAAAGGTCTTGA 1059 0.5316 MVSDSIAAAPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKNKGCKDGVDDDGHAPPSPVGKHEKRSLEQLETRRRGEEDDGSLHQDSDSESPTNSPTSPNGVLCGNDSGTNFTGSSSSGGGSSSSSSSSCAGCCSGNITEEDEEEEEEEGDDECLDDWETMADAIAADDKHQNSCLDSPPSHDEPAVETDSPREVSNGSNLSSPSSKLASARLLPWASGNSRAWRADDAFRPQSLPNLSKQHSMPNPDRRFGGGLPWSRTSTPSSCPICCEDLDLTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVLGGSLTLRLARSCSMIERS. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01482 352 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 272 349 IPR039780 GO:0004842|GO:0030014
Seca12g01482 352 MobiDBLite consensus disorder prediction 54 97 - -
Seca12g01482 352 CDD mRING-HC-C4C4_CNOT4 276 320 IPR039515 -
Seca12g01482 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 333 IPR013083 -
Seca12g01482 352 MobiDBLite consensus disorder prediction 98 146 - -
Seca12g01482 352 MobiDBLite consensus disorder prediction 203 217 - -
Seca12g01482 352 SUPERFAMILY RING/U-box 272 327 - -
Seca12g01482 352 ProSiteProfiles Zinc finger RING-type profile. 277 319 IPR001841 -
Seca12g01482 352 MobiDBLite consensus disorder prediction 1 217 - -
Seca12g01482 352 FunFam RING/U-box superfamily protein 270 335 - -
Seca12g01482 352 MobiDBLite consensus disorder prediction 149 170 - -
Seca12g01482 352 Pfam RING/Ubox like zinc-binding domain 277 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01482 Seca-Chr12 15012497 15013722 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01482 - - gmx:100792365 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01482 12 15012497 15013722 Seca12g01482 12 15012497 15013722 ECH