Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01458 ATGGGGTCAACCTTAGCCAGCTTCATGTTCGTGTGGGCGATCATAAGACAGTACTGTCCGTACGAGCTTCAACGTTTCTTTGAGAAGCACATGCATAGGATCACTGGCTACTTCTACCCTTACATTCGCATCTCCTTCCATGAGTTCCTGGGGGACAGGCTCAAACGCAGTGAGGCTTATGCAGCTGTGGAGGCATACCTGAGTGCCAACACATCAAAGAGTGCTAAGAGGCTCAAAGCAGAAATGGGTAAGGATAATAGCAACTTGGTTTTGACTATGGATGAGTATGAGAGAGTAACTGATGAGTACAAGGGTGTAAAAATTTGGTGGGTTTCTAGCAAGGTTGTCTCACCAACAAAACAGGAGAAGAGGTTCTACAAGCTCACTTTTCATAAGAAATATAGGGACATAATCACAGGTACATATTTGGAGCATGTGATGAGGGAAGGGAAGGAGATTCGTTTGAGGAACAGGCAGAGGAAGTTGTACACCAATAGCCCTGGCTATAAGTGGCCTAGTTATAAGCAAACTATGTGGAGCCACATTGTGTTTGAGCACCCTGCAACATTTGAAACAATGGCCATGGAGCCTGAGAAGAAGAAGGAGATCATTGAGGATTTGGTTACTTTCAGCAAAAGTAAGGATTTTTATGCTAGGATTGGGAAGGCATGGAAAAGGGGTTATCTTCTTTATGGCCCTCCTGGTACTGGTAAGTCCACCATGATTGCTGCAATGGCTAATTTGTTGGCCTATGATGTCTATGACTTGGAGCTCACTGCAGTGAAGGACAACACAGAGCTGAGGAAGCTTTTGATTGAGACAACAAGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCACTTGATCTTACAGGGCAGAGGAAGAAGAAAGGAGATAAGTTGAAAGAAGCTAAGGAAGAAGGATGCATAGGGAGCAAAGTGACACTTTCAGGCTTATTGAATTTCATAGATGGGATATGGTCTGCTTGTGGAGGGGAGAGGTTGATTGTGTTCACAACTAATTATGTGGAGAAGCTTGATCCAGCACTCATCAGAAGGGGTAGAATGGACAAGCATATAGAGCTTTCCTACTGCACTTTTGATGGGTTTAAAGTTCTTGCCAATAATTACTTGAAGCTTGAGACTCATCCATTGTTTGACACAATTAAGAGGCTAATTGGGGAGATCAAGATCACCCCAGCTGATGTTGCTGAGAACCTTATGCCTAAGTCTACATTGGATGATGCAGAAAAGTGTCTTTCAAACTTGATTGAAGCACTTGAGGAATTAGCAGCTGCTACAAAAGCTGAGGAGCTAAGACAGAGTAGCTCCATTAAGGAAGATGAGGAGGATGAAGTGGAACACATTGGTCCCATTAAGGAAAATGGCAAGTTACCAGATGGCAAAGAAATTGATCAAGCAATGAATCAAAGCCAGCGATAG 1446 0.4315 MGSTLASFMFVWAIIRQYCPYELQRFFEKHMHRITGYFYPYIRISFHEFLGDRLKRSEAYAAVEAYLSANTSKSAKRLKAEMGKDNSNLVLTMDEYERVTDEYKGVKIWWVSSKVVSPTKQEKRFYKLTFHKKYRDIITGTYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMAMEPEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLAYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKGDKLKEAKEEGCIGSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFDGFKVLANNYLKLETHPLFDTIKRLIGEIKITPADVAENLMPKSTLDDAEKCLSNLIEALEELAAATKAEELRQSSSIKEDEEDEVEHIGPIKENGKLPDGKEIDQAMNQSQR. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01458 481 ProSitePatterns AAA-protein family signature. 335 354 IPR003960 GO:0005524|GO:0016887
Seca12g01458 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 427 IPR027417 -
Seca12g01458 481 Pfam ATPase family associated with various cellular activities (AAA) 229 364 IPR003959 GO:0005524|GO:0016887
Seca12g01458 481 Gene3D - 362 421 - -
Seca12g01458 481 CDD RecA-like_BCS1 203 363 - -
Seca12g01458 481 SMART AAA_5 224 367 IPR003593 GO:0016887
Seca12g01458 481 MobiDBLite consensus disorder prediction 439 481 - -
Seca12g01458 481 MobiDBLite consensus disorder prediction 439 469 - -
Seca12g01458 481 FunFam AAA-ATPase ASD, mitochondrial 180 361 - -
Seca12g01458 481 PANTHER BCS1 AAA-TYPE ATPASE 2 436 - -
Seca12g01458 481 Pfam Domain associated at C-terminal with AAA 20 112 IPR025753 -
Seca12g01458 481 Coils Coil 414 438 - -
Seca12g01458 481 Gene3D - 180 361 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01458 Seca-Chr12 14717717 14719228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01458 189 441 Miscellaneous Gene Families AT3G47060 27.306 7.90e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01458 - - gmx:100798176 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01458 12 14717717 14719228 Seca12g01458 12 14717717 14719228 ECH