Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01414 ATGTCTTATCATGATATTAGATATATTTATACATGTACATGTCTACATGTTTTGAGTTATTCAGGCACGTTTAAGTTGACTCTTCAATTTACTGAGGATTATCCAAACAAGCCACCCACTGTTCGATTTGTCTCTCGAATGTTTCACCCAAACATTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTTGCTGCCATACTCACTTCTATCCAGTCATTGCTTTGTGACCCCAACCCAAATTCTCCTGCAAACTCAGAAGCAGCTCGAATGTTTAGTGAGAACAAGCGTGAGTACAATCGAAGAGTGCGGGAAATTGTGGAGCAGAGTTGGACAGCCGACTAA 372 0.3925 MSYHDIRYIYTCTCLHVLSYSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD. 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01414 123 Pfam Ubiquitin-conjugating enzyme 21 115 IPR000608 -
Seca12g01414 123 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 48 63 IPR023313 -
Seca12g01414 123 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 121 IPR000608 -
Seca12g01414 123 Gene3D Ubiquitin Conjugating Enzyme 8 123 IPR016135 -
Seca12g01414 123 CDD UBCc 22 116 IPR000608 -
Seca12g01414 123 SUPERFAMILY UBC-like 21 121 IPR016135 -
Seca12g01414 123 SMART ubc_7 3 121 - -
Seca12g01414 123 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 21 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01414 Seca-Chr12 14169931 14174834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01414 17 106 Miscellaneous Gene Families AT5G50430 29.474 2.95e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01414 K10573 - aof:109849353 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01414 12 14169931 14174834 Seca12g01414 12 14169931 14174834 ECH