Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01411 ATGGTAAATCCTGCTCGTGCAAGCTTTTGGACTCAGGCAAACGCTCTTCTCAGGAAGAATCTAACCTTCCAGAAACGAAACGTGAAGACAAACATTCGGCTGATTCTGTTTCCTTTGATCCTGTGCGTTTTGCTGGTTGTCCTCCAACGTTTAATCGACAATCAATTGGATAAGCCCAAGTTCAAATGCGGGTGCGTTTGTGCCAACAACAAAGCAAGAGACGCTCATTGCCATGGCTCCGAGAAGGTTTGTGGGGTCCAGTATTCGGATTCGGATCAATTTGTATTCTGTGCAATTCCCAACCCACCGGAATGGCCCCCTCTCTTGCAACTTCCGGATCCAACCGTTTCTTGCAGGAGAACCTACTCGTGTCCTCTAACCATGCTCTTCACCGCTGATAATCACTCCTTCGGAGAAATTGTGTCTGAAAATATGTTCCCAAGTGTCTTCACTGTAAGTGACTCTGATATCATGGCTAGTTTGGCAGAGAATGTCCTGGGATCTGAATCAATGCCGGAGAGCAACAATTTTTTTGAACCTGCTTTCTCTTCTGGTCTTCCCATTTATTATCTACAAACTCAGTGCCCAAAGAACTCTGAATTCTCCTTTCCCTTCCAAATAGCAGCCACTTATGTGCAGCAAGAGGTAAGGTGTGCTCAGGGTTTACATTTATGGCGAAATAGTTCTTCTGAGATCAACAATGAGCTTTATAAAGGTTATCAAAAAGGTAACCCTGAAGGACAGATCAATGAGATAGTTGCAGCTTATGATTTTCTAAATTCAAATGAGAATAGATTTAATGTCAGCATATGGTACAACTCAACCTACAAGGATGACAATGGATTTGGTCCTGTTGCATTGGTGCGGATCCCTCGTTCTGTAAATCTGATATCGAATGCCTACCTGCAGTTTCTGCTTGGACCTGGTACCAGAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCCAAATTAAGCTTGAGATAGCTTCTCTTCTAGGTGGTCTGTTCTTTACGTGGGTCATCCTGCAACTTTTTCCTGTTGTTCTGACATCACTGGTATATGAGAAACAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCATATAGCTATTTTCTTGCCATATCAGTGATCTACATGTTTTGTTTTGTGATATTTGGCTCAGTCTTAGGATTAAAATTCTTCACATTGAATGACTACAGCATCCAATTTGTGTTTTATTTCATCTATATAAACTTACAAATTTCACTGGCATTTCTGGGGGCTTCCTTATTTTCAAATGCTAAGACTGCTACAGTAACTGCCTATATAGGTGTCTTTGGAACTGGGCTATTAGCTGGCTTTCTTTTCCAATTTTTTGTTCAAAATCCATCATTTCCAAGAGGGTGGATCATTTTTATGGAGCTTTATCCTGGGTTTGCTTTATATCGCGGGTTATATGAGTTTGCACAATATTCCTCGAATGGGAGTACTCTGGGGACTGATGGTATGCGGTGGCAGGATCTGAGTGATAGCACCAATGGCATGAAAGAGGTCTTAATTATCATGTTTGCTGAGTGGAAAGTGATGTTTTTTGCTGCTTATTGCATCGATAAAGTATTGTCATCAGGAAGTGGAAAAAGTCCTCTTTTTTTCTTGAAAGGATTTTTGAGAAAGCCTCCTTCATCAATCCAGAAGCCCAGTATGCTCAGGCAGGTGTCAAAAGTTTTGGTTCAGATGGAGAAACCTGATGTCATCCAAGAGAGGGAGAAGGTGGAGCAGCTGGTACTTGAACCAACTATTAATCATGCAATTGTATGTGACGACCTAAAAAAAGTCTATCCAGGGAGGGATGGAAATCCAGAGAAGTTTGCAGTGAGAGGGTTGTTCCTTGCTGTGCCTCGAGGGGAATGCTTTGGTATGCTCGGTCCCAATGGTGCTGGGAAGACTTCTTTCATCAGTATGATGATTGGTCTCACAAAGCCAACCTCTGGCACGGCATTTGTTCAAGGCCTGGACATAAGAACTCATATGGATGAAATATATACTAGCATGGGAGTGTGCCCACAGTATGACTTACTGTGGGAAAGCTTGACAGGGAGAGAGCACCTACTTTTTTATGGTAGGCTTAAAAATCTTAAAGGTTCCTATTTGACACAAGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTTCATGGAGGGGTCGCTGATAAACAAGCTGGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTGCATTGATTGGGGATCCCAGAGTTGTTTATATGGATGAGCCAAGTACCGGGTTAGACCCTGCTTCAAGAAAAAGCTTATGGAATGTTATTAAGCTTGCAAAACGGGATCGTGCAATCATTCTGACTACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTAGGAATATTTGTAAATGGTAGCTTGCAGTGCGTAGGAAATCCAAAGGAGCTGAAAGCTAGATATGGAGGAACTTATGTGTTCACAATGACAACATCTTCGGATCATGAGAAGGATGTGAAAAACATGGTGCATAAGCTCACCCCAAATGCCAACAGGGTATACCATATCTCTGGTACCCAGAAGTTTGAGCTGCCAAAAGAGGAGGTTAAAATAGCGGATGTATTCCGAGCTGTTGATGCTACAAAGAGAAAATTCACTGTTTTTGCATGGGGTTTATGTGACACCACATTGGAAGATGTCTTCATTAAAGTGGCACGGCTTTTACACCTTTCTCAGGCAGATGAAAACTATAAAAACATTGGATTTTACGAATTGAAGAGAGGAAATTTCAAGCTGAATTTGACAAACTATGGTGCTACAATAATCTCTGCCATAATCCCTGATAAGCATGGGAATTTAGCCGATGTTGTTCTTGGCTACGATTCCATTGATTCTTACATGAATGATACATGTTACTTCGGTGCCCTTATTGGACGCGTGGCAAATAGGATTGGAGGAGCTCAATTCACTTTGGATGGCAAAACCTACAAATTGCCTGCTAATGATCACGGGAACACACTCCACGGTGGTACAAGAGGGTTCAGTGATGTTGTATGGACAGTAAAATCTTACCACAAAAACAGCCACATAACATTTTCCTACAACAGTTTTGATAATGAAGAAGGCTTTCCTGGAAAACTTGAGGTCTCAGTGACTTACATGTTCATTGGAACAAACAAATTGGGTGTGAAAATGATTGCCAAGCCAGTAGACAAAGCCACACCAGTGAACCTAGCACAACATACTTACTGGAACCTGAGGGGACACAACAGTGGTGACATTCTTTCTCATATTGTTCAGATCTTTGGCTCAAAGATCACACCAGTGGATAAGGATCTCATCCCCACTGGCAAATTCCAATCTGTAAAGGATACCCCATATGATTTCCTTGAACCAAAACAAGTTGGAAGTCAGATTCATGACCTTCCTGGTCTATATGACATGAACTATGTGCTTGACAAGAGTGGCCAAGAGCACTTGAGTAAGGTGGCTGTGGTGAGAGATCCTGTCTCTGGGAGGAAAATGGAGCTATGGTCCAACCAACTTGGTGTTCAGTACTATACTAGTGGCATGTTGAAGGATACCAAGGGCAAGGATGGGGCCATATACCACAAGTATGCTGGCATTGCTTTGGAGACACAGGGTTTCCCTGATTCTGTGAATCACCCAAACTTCCCATCACAGATTGTAAATCCTGGGGAGATATACAAGCACTACATGGTTTATAGATTCACAGCTAGCTAA 3798 0.42 MVNPARASFWTQANALLRKNLTFQKRNVKTNIRLILFPLILCVLLVVLQRLIDNQLDKPKFKCGCVCANNKARDAHCHGSEKVCGVQYSDSDQFVFCAIPNPPEWPPLLQLPDPTVSCRRTYSCPLTMLFTADNHSFGEIVSENMFPSVFTVSDSDIMASLAENVLGSESMPESNNFFEPAFSSGLPIYYLQTQCPKNSEFSFPFQIAATYVQQEVRCAQGLHLWRNSSSEINNELYKGYQKGNPEGQINEIVAAYDFLNSNENRFNVSIWYNSTYKDDNGFGPVALVRIPRSVNLISNAYLQFLLGPGTRMLFEFVKEMPKPETQIKLEIASLLGGLFFTWVILQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMISYSYFLAISVIYMFCFVIFGSVLGLKFFTLNDYSIQFVFYFIYINLQISLAFLGASLFSNAKTATVTAYIGVFGTGLLAGFLFQFFVQNPSFPRGWIIFMELYPGFALYRGLYEFAQYSSNGSTLGTDGMRWQDLSDSTNGMKEVLIIMFAEWKVMFFAAYCIDKVLSSGSGKSPLFFLKGFLRKPPSSIQKPSMLRQVSKVLVQMEKPDVIQEREKVEQLVLEPTINHAIVCDDLKKVYPGRDGNPEKFAVRGLFLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPTSGTAFVQGLDIRTHMDEIYTSMGVCPQYDLLWESLTGREHLLFYGRLKNLKGSYLTQAVEESLKSLNLFHGGVADKQAGKYSGGMKRRLSVAIALIGDPRVVYMDEPSTGLDPASRKSLWNVIKLAKRDRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNPKELKARYGGTYVFTMTTSSDHEKDVKNMVHKLTPNANRVYHISGTQKFELPKEEVKIADVFRAVDATKRKFTVFAWGLCDTTLEDVFIKVARLLHLSQADENYKNIGFYELKRGNFKLNLTNYGATIISAIIPDKHGNLADVVLGYDSIDSYMNDTCYFGALIGRVANRIGGAQFTLDGKTYKLPANDHGNTLHGGTRGFSDVVWTVKSYHKNSHITFSYNSFDNEEGFPGKLEVSVTYMFIGTNKLGVKMIAKPVDKATPVNLAQHTYWNLRGHNSGDILSHIVQIFGSKITPVDKDLIPTGKFQSVKDTPYDFLEPKQVGSQIHDLPGLYDMNYVLDKSGQEHLSKVAVVRDPVSGRKMELWSNQLGVQYYTSGMLKDTKGKDGAIYHKYAGIALETQGFPDSVNHPNFPSQIVNPGEIYKHYMVYRFTAS. 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01411 1265 CDD galactose_mutarotase_like 941 1262 IPR047215 GO:0016853
Seca12g01411 1265 FunFam Aldose 1-epimerase 928 1264 - -
Seca12g01411 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 849 IPR027417 -
Seca12g01411 1265 CDD ABC_subfamily_A 615 836 - -
Seca12g01411 1265 Gene3D - 927 1264 IPR014718 GO:0030246
Seca12g01411 1265 SMART AAA_5 641 825 IPR003593 GO:0016887
Seca12g01411 1265 Pfam ABC transporter 637 777 IPR003439 GO:0005524
Seca12g01411 1265 SUPERFAMILY Galactose mutarotase-like 934 1262 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca12g01411 1265 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524|GO:0016887
Seca12g01411 1265 Pfam Aldose 1-epimerase 941 1261 IPR008183 GO:0005975|GO:0016853
Seca12g01411 1265 FunFam ABC transporter A family member 7 600 876 - -
Seca12g01411 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 611 848 IPR003439 GO:0005524
Seca12g01411 1265 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 578 930 IPR026082 GO:0016020|GO:0055085|GO:0140359
Seca12g01411 1265 Gene3D - 602 876 IPR027417 -
Seca12g01411 1265 Pfam ABC-2 family transporter protein 318 535 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01411 Seca-Chr12 14138295 14156433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01411 936 1264 Miscellaneous Gene Families AT3G47800 62.918 4.16e-148 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01411 - - gmx:100792897 1461.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01411 12 14138295 14156433 Seca12g01411 12 14138295 14156433 ECH