Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01331 ATGGAGAGTGAGAAGAAGAGTGGTCAACGCCTTGTGGGTTTACTTTACGATGAGAGGATGTGTAAGCATTCCAACCCACACGACGGTTACCATCCCGAGACCCCAAATCGCATTAGGGCTATTTGGAACAAACTCCAAAACGCTGGAATTCCCGACCGATGTGTGATTTTGGATGCTAAGGAAGCTGAAGATAAATATTTACTGTCAGTGCATACCAAAAATCACGCGAATCTTATTAAGAACATCAGCTCAAAACAGTATGATTCTCGGAGGCTTAAGATTGCGTCGAAATTAAATTCTATATATTTCAATGAAGGTTCATCAGAAGCTGCTTATCTTGCTGCTGGCTCTGCTGTAGAGGCTGTCAAAAGAGTGGCAAGCAGGGAATTGAATTCTGCTGTTGCTATTGTTAGGCCACCAGGTCACCATGCAGAAAAAAATGAAGCCATGGGATTTTGTCTATTCAACAATGTGGCAATTGCTGCAACTTATCTCTTAGATGAAAGACCAGAATTAGGTGTGAAGAAAATTTTAATTGTTGATTGGGACGTCCATCATGGAAATGGTACTCAAAAAATGTTCTGGAATGATTCTCGAGTTTTATTCTTCTCCGTTCACAGGCATGAATTTGGGAGTTTTTATCCAGCTAATGACGATGGATTTTATACCATGATTGGAGAAGGAGAAGGTGCTGGATATAATATAAATGTGCCATGGGAGAATGGGAGATGCGGTGACGCAGACTATTTTGCAGTGTGGGACCACATCTTGCTCCCTGTTGCCAAAGAATTTAATCCAGACATAATTATAGTTTCTGCTGGATTTGATGCAGCTGCTGGAGACCCTCTGGGAGGATGTCGTGTAACACCATTTGGTTATTCTGTTCTGTTGAAAAAGTTGATGAATTTCGCTGAAGGTAAAATTGCACTGATTTTAGAGGGTGGATATAATCTTGACTCCATTGCAAAATCAATGCATGCTTGTATTGAAGTTTTGTTAGAAGACAAGGCTCTTATTGGATCCTCAGAGGCTTATCCATTTGAGTCTACATGGCGTGTGATTCAAGCGGTTCGCCAGGAGTTAAGTCCCTTTTGGCCTACACTTGCTTGTGAATTACCAGAAAAATTAATTTGTCAAATCGCACCACCTCCGCATACTCTTATCTCAAGCTCGGACTCTGAGGCTGAGGATGACAAGAGTCCTTCCAATTCTGAAAATCTTGCAGAGCTTCTTCAGGATGTCATAAAACCGCTTTCCATGTTGAAAGTTGATGCAGCTTATGCAGATGAAGAGACTGATGCTTCTACTTCTTGGCGATCCGAATTATCAAATGTTTACATATGGTATGCCTCATATGGATCAAATATGTGGAAATCAAGACTACATTGCTACCTAGCAGGTGGACAGGTGGAAGGCATGCAGAAGCACTGTTCTGGTTCAGTGAACAAAACTCTTCCAAAGGAGATCCTGTGGAAGACTTTCCCTTGCCATATATTTTTTGCTCGTGATTTCTCATATTCATGGGGTCCTGGAGGGGTTGCATTTCTTAATCCTGAGAGAAACATTCAGCACAACACCTACATGTGCCTGTACAAAATATCGCTAGAGCAGTTCAATGATATTTTATTTCAGGAAAACGGCTTAAGCCTTAATGTTAGCTCTCCTTTATTAGATATAACTACCCTGAATGCCATCTCTGACAAAGAGTTCAATACTCGGGTGATTGTCGAGGGTGGTTGGTATGGTAATGTTGTCTACTTAGGAAAGGAGCAAGATATTCCAATAATCACTATGACGTGTTCGCCTCTTGATATTGAACGCTTTAAATCTGGGAAGCTACCATCACGTGGCCCTAATAAAGCGTATGCCAACACATTAGTAAAAGGATTGGTAGAGGGAGAACAGCTTTCAGAGGAGGAAGCCATTGCTTACATAGAAGCTGCTGCCTAA 1950 0.4154 MESEKKSGQRLVGLLYDERMCKHSNPHDGYHPETPNRIRAIWNKLQNAGIPDRCVILDAKEAEDKYLLSVHTKNHANLIKNISSKQYDSRRLKIASKLNSIYFNEGSSEAAYLAAGSAVEAVKRVASRELNSAVAIVRPPGHHAEKNEAMGFCLFNNVAIAATYLLDERPELGVKKILIVDWDVHHGNGTQKMFWNDSRVLFFSVHRHEFGSFYPANDDGFYTMIGEGEGAGYNINVPWENGRCGDADYFAVWDHILLPVAKEFNPDIIIVSAGFDAAAGDPLGGCRVTPFGYSVLLKKLMNFAEGKIALILEGGYNLDSIAKSMHACIEVLLEDKALIGSSEAYPFESTWRVIQAVRQELSPFWPTLACELPEKLICQIAPPPHTLISSSDSEAEDDKSPSNSENLAELLQDVIKPLSMLKVDAAYADEETDASTSWRSELSNVYIWYASYGSNMWKSRLHCYLAGGQVEGMQKHCSGSVNKTLPKEILWKTFPCHIFFARDFSYSWGPGGVAFLNPERNIQHNTYMCLYKISLEQFNDILFQENGLSLNVSSPLLDITTLNAISDKEFNTRVIVEGGWYGNVVYLGKEQDIPIITMTCSPLDIERFKSGKLPSRGPNKAYANTLVKGLVEGEQLSEEEAIAYIEAAA. 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01331 649 PRINTS Histone deacetylase superfamily signature 139 162 IPR000286 -
Seca12g01331 649 PRINTS Histone deacetylase superfamily signature 266 276 IPR000286 -
Seca12g01331 649 FunFam Histone deacetylase 15 5 382 - -
Seca12g01331 649 Gene3D - 434 649 - -
Seca12g01331 649 PANTHER HISTONE DEACETYLASE 9-RELATED 12 390 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Seca12g01331 649 Pfam Histone deacetylase domain 31 331 IPR023801 -
Seca12g01331 649 Gene3D Histone deacetylase domain 5 379 IPR037138 -
Seca12g01331 649 SUPERFAMILY Arginase/deacetylase 12 366 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01331 Seca-Chr12 13057095 13068391 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01331 K11406 - gmx:100788831 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01331 12 13057095 13068391 Seca12g01331 12 13057095 13068391 ECH