Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01325 ATGGCTTTCTCTGCCTTCGTCGTCTTGGGATTCCTTGGCGGTGAAATCTCACTGTTCCTTATTCAACATTTTAGTACCCCCGTTGATTGCATAACGTTTTTCCTTGTTTTGTGTAATTTTGCTGTTGTGGGTGTTTTGGCTGTGTTTATGTCAAAAATGGCAATTCTTGTGACGCAAGGGTACTTGGTTATTATTGGAATATTGGTTGCTTATTGGTTTACTATGTTACCTGAGTGGACAACTTGGGCCATGCTTGTTGCTATGGCTTTGTATGATCTTGCTGCAGTTTTGTTGCCTGTTGGGCCATTGAGGCTTTTGGTGGAGCTTGCAATATCAAGGGATGAAGAAATTCCTGCATTGGTTTATGAGGCTAGGCCAGTGAACCATGATAGTTTGGATTCAAGGGATAGTGTAGCTCAGAGGAGGATGTGGAGAGATAGGAGGATTGAGAATTCAAATCTTTTAACTGGTTCCAATTTGAATGGAAACTCAAACTCTCTGTTAGGTCATGGCCTCAATGTTGAACAATCACACTCCAATTTAGATGCAAATACAAACCCTGTTTTTACTTCAAATTCAAACAGCAATAATACCCCGGATGACACGAATTTGGTTAGGGAAAATGCTTCAAGTTTGAATTCTAGTACTTCTTATAGTGACAGAAATTTGGTAAGAGCTGAAGAGGGACGGGTACGGGTACGGGTTCAGGAAACTGACTCGGACCTCTCTACGCCATTGATTGGTCATGGAGTGAATGTTCAGCTCCATAGAGCAGAAGATCCTGCATCAAATGAAAGTTTGATGCTTGAGGGAATTGGATTGGGTTCATCTGGTGCAATCAAGTTAGGGCTGGGTGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCTGCAATGTATGATTATATGACGGTGTATGCATGTTATCTTGCTATCATTGCTGGTCTGGGCATAACTTTGATGCTTTTGGCTTTATATCAGAAAGCTTTGCCTGCTCTTCCTGTGTCAATAGCACTGGGTGTGTTGTTTTATTTTTTGACCAGGCTCTTACTTGAAGTATTTGTTGTACAATGTTCCTTAAATCTCCTGATGTTCTAA 1098 0.4107 MAFSAFVVLGFLGGEISLFLIQHFSTPVDCITFFLVLCNFAVVGVLAVFMSKMAILVTQGYLVIIGILVAYWFTMLPEWTTWAMLVAMALYDLAAVLLPVGPLRLLVELAISRDEEIPALVYEARPVNHDSLDSRDSVAQRRMWRDRRIENSNLLTGSNLNGNSNSLLGHGLNVEQSHSNLDANTNPVFTSNSNSNNTPDDTNLVRENASSLNSSTSYSDRNLVRAEEGRVRVRVQETDSDLSTPLIGHGVNVQLHRAEDPASNESLMLEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDYMTVYACYLAIIAGLGITLMLLALYQKALPALPVSIALGVLFYFLTRLLLEVFVVQCSLNLLMF. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01325 365 PRINTS Presenilin family signature 92 109 IPR001108 GO:0004190|GO:0016020|GO:0016485
Seca12g01325 365 PRINTS Presenilin family signature 75 82 IPR001108 GO:0004190|GO:0016020|GO:0016485
Seca12g01325 365 MobiDBLite consensus disorder prediction 177 221 - -
Seca12g01325 365 FunFam Presenilin 255 356 - -
Seca12g01325 365 SMART psh_8 1 351 IPR006639 GO:0004190|GO:0016020
Seca12g01325 365 PANTHER PRESENILIN 1 365 IPR001108 GO:0004190|GO:0016020|GO:0016485
Seca12g01325 365 Pfam Presenilin 1 355 IPR001108 GO:0004190|GO:0016020|GO:0016485
Seca12g01325 365 Gene3D Presenilin 271 357 IPR042524 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01325 Seca-Chr12 13021999 13024218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01325 1 365 Miscellaneous Gene Families AT1G08700 48.501 6.09e-98 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01325 K04505 - gmx:100799643 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01325 12 13021999 13024218 Seca12g01325 12 13021999 13024218 ECH