Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01321 ATGGCTTCCTCCTTCATAAATCTAAACTTTTCAGGTATTGCACCTTTTGTATTTCTATTGCTCATTATTGGGGGCACTGCAAGGCCTTTGTATCCACTTCCTAGCAAAGGTGATGATGGAAGTAGGCAGCCTCTACAAACATTTCGCCCATATAACATTGCACATCGGGGTTCAAATGGAGAGCTTCCTGAAGAAACTCGTCCAGCATACATGAGAGCTATTGAAGAAGGCGCAGACTTCATTGAATCTGATATCTTATCCTCTAAAGATGGTGTTCTTATATGTTTCCATGATGTTACCCTTGATGATACTACTGACATCGCAAAACACAAAAAGTTTGCCAATCGTAGAAGAACATATGAAGTCCAAGGGGTCAACATCACTGGCTTTTTTACTGTTGATTTCACATTAGAAGAATTAAAGTCATTGAGGGTGAACCAGAGGTACAGCTTCAGGGATCAACAGTTTAATGGAAAATTTCAAATCATCACTTTCGAAGAGTTCATTTCCATAGCACTGGATGCACACAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTATTTATCAATCAGCATGTGAAATGGTCAGATGGAAAAAGATTTGAGGACAAGTTTGTGGAGACACTTAAGAAATATGGATACAAGGGTTCGTACCTGTCAAAAGATTGGTTGAAACAACCTGCATTTATTCAGTCATTTGCTCCAACTTCCCTTGTGCATATATCAAATCAAACAGACTTACCCAAGATTTTCTTAATTGATGATACTACTACTCCAACGCAAGACACTAATCAGTCATATTGGGAAATTACATCTGATAAGTACCTAGACTACATAAAGCAATATGTTGTGGGAATTGGACCTTGGAAGGACACGGTGGTACCTGTGGTGAATAATTATATGATAACTCCTACTAATCTTGTTGCCAGGGCACATTCTCATAACCTGCAGGTACATCCATATACTTACAGAAATGAGAACCGGTTTTTGCACTTCAACTTTAGTCAAGATCCATATGCAGAGTATGATTACTGGATCAACAAGGTAGGAGTTGATGGTCTGTTTACGGACTTCACAGGTAGTCTACATAATTTTCAGAGATGGACCTCCCCTGAACATCAAGATAACAGTGATGACAAGACTGCTTCCAAGCTATTGCATAAAATTGCTTTGTTGGTATCCCCTTATAATTGA 1200 0.3867 MASSFINLNFSGIAPFVFLLLIIGGTARPLYPLPSKGDDGSRQPLQTFRPYNIAHRGSNGELPEETRPAYMRAIEEGADFIESDILSSKDGVLICFHDVTLDDTTDIAKHKKFANRRRTYEVQGVNITGFFTVDFTLEELKSLRVNQRYSFRDQQFNGKFQIITFEEFISIALDAHRVVGIYPEIKNPVFINQHVKWSDGKRFEDKFVETLKKYGYKGSYLSKDWLKQPAFIQSFAPTSLVHISNQTDLPKIFLIDDTTTPTQDTNQSYWEITSDKYLDYIKQYVVGIGPWKDTVVPVVNNYMITPTNLVARAHSHNLQVHPYTYRNENRFLHFNFSQDPYAEYDYWINKVGVDGLFTDFTGSLHNFQRWTSPEHQDNSDDKTASKLLHKIALLVSPYN. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01321 399 CDD GDPD_ScGlpQ1_like 50 361 - -
Seca12g01321 399 ProSiteProfiles GP-PDE domain profile. 50 368 IPR030395 GO:0006629|GO:0008081
Seca12g01321 399 FunFam Glycerophosphodiester phosphodiesterase GDPD5 48 367 - -
Seca12g01321 399 SUPERFAMILY PLC-like phosphodiesterases 50 366 IPR017946 GO:0006629|GO:0008081
Seca12g01321 399 Gene3D Phosphatidylinositol (PI) phosphodiesterase 48 367 IPR017946 GO:0006629|GO:0008081
Seca12g01321 399 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 46 377 - -
Seca12g01321 399 Pfam Glycerophosphoryl diester phosphodiesterase family 55 362 IPR030395 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01321 Seca-Chr12 12969633 12975420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01321 22 376 Acyl Lipid Metabolism Gene Families AT5G08030 77.465 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01321 K01126 - gmx:100778145 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01321 12 12969633 12975420 Seca12g01321 12 12969633 12975420 ECH