LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g01318	ATGGCAACGCAGGAAGCAAGCCCTGCCACAACTCCTAGTGCTCAAGTTGTTGGTAATGCCTTTGTGGAGCAATATTATCACATTCTGCACCAATCCCCAAACTTGGTGCACAGATTTTATCAGGATTCAAGTTTCTTAAGCAGGTCAGACAGCAATGGTGTGATGACGACTGTGACAACTACAAAAGCAATCAATGAAAAGATCGTTTCCCTGAATTATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCATATGAGAAAGGTGTGATCGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGACAAAGGATATTATGTCTTAAATGACGTCTTTAGGTACATTGAGGAGAATGACACACCACAGTTAAATTCTGCCCCAGTAAATGTCATTAATGAAAATGCTGAGGCACACATGCCAGAATCAGGGGATGTACATGCTCCTGAACATCTTGTGGCAGATCCTGAAATTTCTGCAGAGGGTGAAAACCTTAATAATGGTGCTGACGTTTATCATCCTCAGGACGACGAGGAAGAAGGATCAGTTATTGATGAAGAGGTCATTGAACCGTCTACTGAATTAAGTCAGAATGACATTGTTACAAGTCATGATTCAGCTTCTGCTGTCCAGGATGATGCACCAAGGAAATCATCATATGCATCAATTGTAATGAAAAGTAACACAGCATCTGGTCGTGTCTATGTTCCCAGCCGAGCTGCAAGAGTAGCATCTGCAAAAACCAGTGAACCATTGCCTGCTGTTGCCAAATCTACACCTGGGCCTGAGGCATTAGCTCCTAGTAGTGACAGTGCACCTGGGAGTAGCGATGTTCATGAAGAAGCTGAAGGTCACTCCATATATATACGGAACTTGCCATTTAATGCAACAGTTGAACAACTTGAAGAGGTTTTTAAGAAATTTGGTCCTATTAAGCATGGCGGCATCCAAGTTAGAAGCAGTAAGCATGGATTCTGTTTTGGTTTTGTTGAATTTGAGGAATTGAGTTCCATGCAAAGTGCGCTTGAGGCTTCACCTATAGTTGTTGGTGAGCGACAAGCTGTTGTTGAGGAAAAGAGAACTACTACACGAGTCAGCGGTAGTGGGAGAGGGAGGTATCCCTCAGGAAGAGGTGGTTTCCGAAGTGACAGCTTTAGGGGGCGTGGGAAATTCGGCGGTGGACGTGGTTATGGCAGAAATGAATTCAGAAACCAAGGAGAGTTCTCAGGGCGACCTAAGAGTTCTCAACGGCCAAGTCAGAATGGTGGTGGGCGGGGTGGACGTCAAGGTGTGGGAAATCGTTATTCAACACCATCCACTACAGCATGA	1383	0.4418	MATQEASPATTPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLSRSDSNGVMTTVTTTKAINEKIVSLNYEDYTAEIKTADAQESYEKGVIVLVTGCLTGKDNVRRKFSQTFFLAPQDKGYYVLNDVFRYIEENDTPQLNSAPVNVINENAEAHMPESGDVHAPEHLVADPEISAEGENLNNGADVYHPQDDEEEGSVIDEEVIEPSTELSQNDIVTSHDSASAVQDDAPRKSSYASIVMKSNTASGRVYVPSRAARVASAKTSEPLPAVAKSTPGPEALAPSSDSAPGSSDVHEEAEGHSIYIRNLPFNATVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEELSSMQSALEASPIVVGERQAVVEEKRTTTRVSGSGRGRYPSGRGGFRSDSFRGRGKFGGGRGYGRNEFRNQGEFSGRPKSSQRPSQNGGGRGGRQGVGNRYSTPSTTA.	461

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g01318	460	SUPERFAMILY	RNA-binding domain, RBD	300	408	IPR035979	GO:0003676
	Seca12g01318	460	Gene3D	-	284	385	IPR012677	-
	Seca12g01318	460	MobiDBLite	consensus disorder prediction	209	235	-	-
	Seca12g01318	460	FunFam	Ras GTPase-activating protein-binding protein 1	291	418	-	-
	Seca12g01318	460	FunFam	Nuclear transport factor 2 family protein	8	137	-	-
	Seca12g01318	460	ProSiteProfiles	Nuclear transport factor 2 domain profile.	17	133	IPR018222	-
	Seca12g01318	460	MobiDBLite	consensus disorder prediction	425	441	-	-
	Seca12g01318	460	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	303	379	IPR000504	GO:0003723
	Seca12g01318	460	SUPERFAMILY	NTF2-like	13	134	IPR032710	-
	Seca12g01318	460	CDD	RRM_SF	305	362	-	-
	Seca12g01318	460	MobiDBLite	consensus disorder prediction	264	300	-	-
	Seca12g01318	460	Pfam	Nuclear transport factor 2 (NTF2) domain	17	133	IPR002075	-
	Seca12g01318	460	MobiDBLite	consensus disorder prediction	376	460	-	-
	Seca12g01318	460	PANTHER	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	13	433	IPR039539	-
	Seca12g01318	460	SMART	rrm1_1	304	375	IPR000504	GO:0003723
	Seca12g01318	460	MobiDBLite	consensus disorder prediction	208	235	-	-
	Seca12g01318	460	CDD	NTF2	13	135	IPR018222	-
	Seca12g01318	460	Gene3D	-	7	137	-	-
	Seca12g01318	460	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	305	362	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g01318	Seca-Chr12	12924620	12932480	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g01318	K24983		-	gmx:100801253	695.656

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca12g01318	12	12924620	12932480	Seca12g01318	12	12924620	12932480	ECH