Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01310 ATGGTTTTGGGCTTGATTATAGCAAATGTTGCTGTTTTTTTATTATGGAGGATAGCAGATGACCGGTTTATGATAAAAAACTTTACTATCTCTTTGAACAATATTAAGAGCGGACGCTTGCACACTTTGATTACCAATGCATTCAGTCACGTAGATACCTGGCATATAATTTCCAACATGATTGGACTCTACTTCTTTGGAACGAATATTGGAAGAATCTTTGGACCTGAATTTCTGCTGAAGCTGTATCTTGCTGGGGCAATTGGTGGTTCTGTTTTCTACTTAGCACACCAAGCCTATAAGGCTCAAAGAAAAAAGGGCTGGGGAATTCACAACCCGTCAATGGAATTGGGATTGGGGGCAAGTGGAGCTGTGAATGCAGTTATGCTGCTTAACATATTCCTCAATCCAAAAGCAACCATTTACTTTAATTTTTTTATACCAGTTCCTGCAGTCTTGCTGGGCATCTTTTTGATTGGGAAAGATATGCTGAGGATAATAGAGGGAGATAGTACCATATCAGGATCTGCGCATTTGGGCGGCGCTGCAGTTGCAGCCATAGCTTGGGCAGGTGTTCGGAAAGGAAGATTCTAA 594 0.4125 MVLGLIIANVAVFLLWRIADDRFMIKNFTISLNNIKSGRLHTLITNAFSHVDTWHIISNMIGLYFFGTNIGRIFGPEFLLKLYLAGAIGGSVFYLAHQAYKAQRKKGWGIHNPSMELGLGASGAVNAVMLLNIFLNPKATIYFNFFIPVPAVLLGIFLIGKDMLRIIEGDSTISGSAHLGGAAVAAIAWAGVRKGRF. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01310 197 PANTHER RHOMBOID PROTEASE 5 190 - -
Seca12g01310 197 FunFam RHOMBOID-like protein 12, mitochondrial 1 196 - -
Seca12g01310 197 Pfam Rhomboid family 35 191 IPR022764 GO:0004252|GO:0016020
Seca12g01310 197 SUPERFAMILY Rhomboid-like 2 194 IPR035952 -
Seca12g01310 197 Gene3D - 1 190 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01310 Seca-Chr12 12813126 12818942 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01310 - - gmx:100819148 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01310 12 12813126 12818942 Seca12g01310 12 12813126 12818942 ECH