Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca12g01250 | ATGCCTACCGTCAGCGTGGGGCGGGATCGCCTGTTTGCGGCTCTAGGAAGAACTTACACGCAAGAGGAATTCGAAGACCTCTGCTTCAGTTTTGGGATCGAGCTCGACGACGTCACCACAGAAAAGGCAATTGTGAGAAAAGAGAAGCATTTGGAGGAAGAAGAAGAAGCTGATGAGGATGAAGAAGTTATCTACAAAATCGAAGTTCCTGCAAACAGGTATGACCTGCTCTGCCTTGAGGGGCTTGCTCAATCCCTCCGAATTTTCTGTGGGATCCAGGAGATCCCTACTTACAAATTGGCTGACATTAGTAAGGATGCAATGGTCAAAATGCATGTGAAACCAGAGACATCTCTGATTCGTCCATATGTTGTATGTGCCGTATTAAGAGGTTTAACTTTTGATAAAGCAAGATACAACAGCTTTATTGATCTCCAAGACAAGCTTCACCAAAACATTTGTCGGCGAAGAACTCTTGTTGCCATCGGGACTCATGATCTGGATAAATTGGAGGGCCCTTTCACCTATGAGGCTTTACCACCTACAAGTATAAGTTTTACACCACTAAAGCAGGAAAGGAGCTTCAGGGCTGATGAGCTGATGGAGTTCTACAAATCAGATTTGAAACTGAAGAAATTCTTGCATATAATTGAGGATTCTCCTGTTTTTCCTGTTATATATGACAGTAAGAGAACTGTTTTATCTTTACCCCCAATAATCAATGGTGCACATTCAGCCATCACTCTGGAGACTAAGAATGTATTTATTGAATGTACTGCTACTGATCTTACAAAGGCGAAGATTGTTTTAAATACAATGGTAACAACCTTCTCAGAGTACTGTGAAAATAAGTTTGTTATTGAACCAGTTGAAGTGATTTATTCTGATGGAAAGTCACACATATATCCTGATTTATCTGTCTACAATATGGAAGTTTCTCTATCTTACATTACTGGATTGATTGGGGTATCATTGGAGGCAGAAGAGGTCACTAAGTTCTTAAATCAGATGCAATTGCATGCCAAGCAATCTACATCTGGCAATAAGCAGTGTAAAATTGTTGTATCTGTACCTCCTACTAGAAGTGATGTCCTTCACCCATGTGATGTTATGGAGGATGTTGCAATTGCTTATGGATTCAATGCTATTAAGGATAAAGCAATAGTAGATAATAAGGGCTCAAAGAGACTGGCTGCTTCCTTGACACTACTTTCTCTGAATGAGCTCAGTGATCTTATCAGAAAAGAGGTTGCAATGGTTGGTTTCACAGAGGTCTTGACCTTTATACTCTGCTCTAAAAAGGAAAACTTTGCCATGCTTAACCGCAAAGATGATAAGTCTAAAGCAGTTATCATTGGAAACCCTAGGTCTTCAGACTTTGAGGCTGTCCGGACTAGTCTTATGCCTGGCATTTTGAAAACTGTTGCTCACAACAAGGATCATCCAAAGCCCATAAAGATTTTTGAAGTGGGGGATATAGCAATTTTGGACGACAAAAATGATGTTGGTGCAAAAAACCTTCGCCAACTTGCTGCACTTTACTGTGGTGCTAATGCAGGATTTGAGATAATTCATGGATTGGTGGACAGAGTAATGGAAAAGAATGGGATTCCGTTTGTTTCACCTGGTGATAAGTCAGGGTATTATATTGAGCGGTCAGATGAGCCTGAGTTTCTTGCTGGTAGACAAGCTAAAATCATTTACAAGGGAAAACACATTGGGACTTTTGGCATTGTTAATCCAGAGGTATTAAACAACTTCGACATTCCTGATCCCTGCTCCTTTGTAGAACTTAACATTGAAAGTCTCTTATAA | 1815 | 0.4039 | MPTVSVGRDRLFAALGRTYTQEEFEDLCFSFGIELDDVTTEKAIVRKEKHLEEEEEADEDEEVIYKIEVPANRYDLLCLEGLAQSLRIFCGIQEIPTYKLADISKDAMVKMHVKPETSLIRPYVVCAVLRGLTFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLEGPFTYEALPPTSISFTPLKQERSFRADELMEFYKSDLKLKKFLHIIEDSPVFPVIYDSKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKIVLNTMVTTFSEYCENKFVIEPVEVIYSDGKSHIYPDLSVYNMEVSLSYITGLIGVSLEAEEVTKFLNQMQLHAKQSTSGNKQCKIVVSVPPTRSDVLHPCDVMEDVAIAYGFNAIKDKAIVDNKGSKRLAASLTLLSLNELSDLIRKEVAMVGFTEVLTFILCSKKENFAMLNRKDDKSKAVIIGNPRSSDFEAVRTSLMPGILKTVAHNKDHPKPIKIFEVGDIAILDDKNDVGAKNLRQLAALYCGANAGFEIIHGLVDRVMEKNGIPFVSPGDKSGYYIERSDEPEFLAGRQAKIIYKGKHIGTFGIVNPEVLNNFDIPDPCSFVELNIESLL. | 605 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca12g01250 | 604 | CDD | PheRS_beta_core | 407 | 603 | IPR041616 | - | |
| Seca12g01250 | 604 | Gene3D | - | 1 | 90 | - | - | |
| Seca12g01250 | 604 | NCBIfam | phenylalanine--tRNA ligase subunit beta | 1 | 604 | IPR004531 | GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 | |
| Seca12g01250 | 604 | SUPERFAMILY | Putative DNA-binding domain | 5 | 96 | IPR009061 | - | |
| Seca12g01250 | 604 | Gene3D | - | 308 | 383 | - | - | |
| Seca12g01250 | 604 | Pfam | Phe-tRNA synthetase beta subunit B1 domain | 1 | 91 | IPR040659 | - | |
| Seca12g01250 | 604 | FunFam | phenylalanine--tRNA ligase beta subunit | 102 | 306 | - | - | |
| Seca12g01250 | 604 | SUPERFAMILY | Putative DNA-binding domain | 309 | 384 | IPR009061 | - | |
| Seca12g01250 | 604 | PANTHER | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 | 1 | 603 | IPR045060 | GO:0004826|GO:0006432 | |
| Seca12g01250 | 604 | SUPERFAMILY | Class II aaRS and biotin synthetases | 377 | 603 | IPR045864 | - | |
| Seca12g01250 | 604 | FunFam | Phenylalanine--tRNA ligase beta subunit | 1 | 91 | - | - | |
| Seca12g01250 | 604 | FunFam | Phenylalanyl-tRNA synthetase, beta subunit | 308 | 383 | - | - | |
| Seca12g01250 | 604 | Pfam | Phenylalanyl tRNA synthetase beta chain CLM domain | 407 | 600 | IPR041616 | - | |
| Seca12g01250 | 604 | Pfam | B3/4 domain | 121 | 282 | IPR005146 | GO:0003723|GO:0004826 | |
| Seca12g01250 | 604 | Pfam | tRNA synthetase B5 domain | 310 | 380 | IPR005147 | GO:0000287|GO:0003723|GO:0005524|GO:0006432 | |
| Seca12g01250 | 604 | SMART | B3_4_2 | 120 | 282 | IPR005146 | GO:0003723|GO:0004826 | |
| Seca12g01250 | 604 | Gene3D | Bira Bifunctional Protein; Domain 2 | 404 | 604 | IPR045864 | - | |
| Seca12g01250 | 604 | SUPERFAMILY | PheT/TilS domain | 222 | 284 | - | - | |
| Seca12g01250 | 604 | ProSiteProfiles | B5 domain profile. | 305 | 385 | IPR005147 | GO:0000287|GO:0003723|GO:0005524|GO:0006432 | |
| Seca12g01250 | 604 | FunFam | phenylalanine--tRNA ligase beta subunit | 404 | 604 | - | - | |
| Seca12g01250 | 604 | Gene3D | - | 102 | 306 | IPR020825 | - | |
| Seca12g01250 | 604 | SMART | B5_2 | 307 | 380 | IPR005147 | GO:0000287|GO:0003723|GO:0005524|GO:0006432 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca12g01250 | Seca-Chr12 | 12231872 | 12245192 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca12g01250 | K01890 | - | gmx:100805249 | 1113.21 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca12g01250 | 12 | 12231872 | 12245192 | Seca12g01250 | 12 | 12231872 | 12245192 | ECH |