Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01228 ATGCTACAAACCCCAAGAGTACTGCAATCTTCCCCTCAACCATTCAACCCTCCAACTCGTACCTCAGCACCACCACCTTCATCATTCCAACTATCACCCACAACTCCACCTTTTCCAATCCTCAAACAGCAATGCAGATTATCACGTAGAGAGCTCACAATCTACAGCAACTCTTGCTTGCTGCTTCTTTTGGGTGCTCAGGCAGTGGATGGAACCAAAGCAAGAGCAGAAGAAAATGTTACCAACACAAGTAACAGTGATCAACAGGGAGAGAATTTGAATACCACTCCAAGCTGCACTGAAAGAGAACCTACCAAACGAGTTTTCTTTGACATATCCATTGATGGTGAACCTGTTGGTCGCATTACTATAGGGCTCTATGGAGATGATGTCCCTTTAGGAGTTGATAGGTTTAGTAAGATTGTCAGTGGAGCTGCTGGTATTAGCTACAGAAGAAAAGAGTTTGTCAAAATCATGCCCAGTTATGTCCAACATGGAGGCCTTAGATCCTATGGTGTGGATGCTGAACTTGCTAAGAAGACAGGGAGCGATTTGGCAGCTGATAGTCTTGTTGATGAATGGGAGAGAGCGTATGAGAGATGCCCTGGGACTAAAAACGTGGCTGGAAGTGTAGGCATTATTGTGAGAGACCCATCAAAACCACCCCCAAAGTTGAAGCTGGTTGCAAGAAAAGGGAAGCTGGAGATTGATGAAGAAGAAGTTGGAACTGATCCCAATGGGACTGAATTTGTCATTGCCACCAAGGATTCACCAGAATTGGATACATCGTCTCTGGTAATCGGAAGGGTTGTAGGAGGAATGGAGGTTGTGCAGAGGATTGGTCAAGTAAAAACCGTACAGGAAAATACCAGTTCTCCATATTTTAGGGGTGGCAAAGCTTATAGGAGACAAGAGAGCTGTTGTAGCAGAAAGGGGATTCAACCGCCCTTATTCAAAAGTTGTCGTTACAAACTGTGGTATAATGGGGTAGCACAAAACTGTATTCACTGA 1011 0.4461 MLQTPRVLQSSPQPFNPPTRTSAPPPSSFQLSPTTPPFPILKQQCRLSRRELTIYSNSCLLLLLGAQAVDGTKARAEENVTNTSNSDQQGENLNTTPSCTEREPTKRVFFDISIDGEPVGRITIGLYGDDVPLGVDRFSKIVSGAAGISYRRKEFVKIMPSYVQHGGLRSYGVDAELAKKTGSDLAADSLVDEWERAYERCPGTKNVAGSVGIIVRDPSKPPPKLKLVARKGKLEIDEEEVGTDPNGTEFVIATKDSPELDTSSLVIGRVVGGMEVVQRIGQVKTVQENTSSPYFRGGKAYRRQESCCSRKGIQPPLFKSCRYKLWYNGVAQNCIH. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01228 336 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP26-2, CHLOROPLASTIC 1 317 IPR044185 -
Seca12g01228 336 MobiDBLite consensus disorder prediction 75 101 - -
Seca12g01228 336 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 110 289 IPR002130 GO:0000413|GO:0003755
Seca12g01228 336 MobiDBLite consensus disorder prediction 17 33 - -
Seca12g01228 336 Gene3D - 96 295 IPR029000 -
Seca12g01228 336 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 109 293 IPR002130 GO:0000413|GO:0003755
Seca12g01228 336 MobiDBLite consensus disorder prediction 1 16 - -
Seca12g01228 336 MobiDBLite consensus disorder prediction 76 101 - -
Seca12g01228 336 FunFam Peptidyl-prolyl cis-trans isomerase B 98 321 - -
Seca12g01228 336 SUPERFAMILY Cyclophilin-like 105 287 IPR029000 -
Seca12g01228 336 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01228 Seca-Chr12 12046046 12048103 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01228 K03768 - gmx:100796313 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01228 12 12046046 12048103 Seca12g01228 12 12046046 12048103 ECH