Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01226 ATGGATGTGAGGAACATAGCAGTGGTGGTGGAAGATGTGGATGCAGCAAGAACTGCACTAATTTGGGCACTTCACAACATCATTCGCTATGGTGACATAATCACTCTGCTCCATGTCTACCCTTTTACAAGATCCAAAACCAAAAACAAAGCTCGTCTTCTTCGTCTCAAAGGCTTCCATTTAGCCCTTTCCTTTCAAGACATCTGCAACAACTTCTCCAATACAAAAGTTGAGATTGTTGTCACGGAAGATGACCGAGAAGGAATGAAAATCGTGGCCACCGTGCGAGAAATTGGAGCTTCAATGCTTGTGGTTGGACTCCATGATCATAGTTTTCTTTACAACTTGGCAATGGGCCATAACAGTATAGGTAGCTACTTCAACTGCAGAGTGCTTGCCATCAAACAGCAACCAGAGTCCCCACTGAGTACCATGGTTTCTGCAGTAGGAGTCCTAGACAGTTCAACTGAAATGGACTTTTCACAGATCCATATTTCTAGATTACAGGTTCCTGATACCCCTCCACCAAAAGTAAAATACCGGATTTGCCCTGACCCGGGTGCAATTATTTGGAGATTTAGGAGATCCTCAAGGAGAAGGCAGGTGACGGTTGGTGGAGATTACATGGACTGGGGTGTCAATAATCACTACAGAACTTACAAAGAAAAGCCAATTCCTGTGACTTCACTCAAGCCAAGAAAGAAAACAATGACATCAGTTTATTTGAAGTTCTTTGAGACAGCTGCTGATGGGAAGACCCGGAGATGCAAGTTTTGTGGACAAACCTATTCTATTGCAACTGCCACAGGCAATTTGGGAAGGCATCTTGCTAATCGCCATCCGGGTTATGACAAGTCAGGAGATGCTGTCAACAATTCAGCAGCACGGCCCACTGCTGTGGTCAAGAAGTCTCAGCCTCAAGGAAAAGCAAACCAGGTGGATTATGATCATCTAAATTGGTTACTCATTAGGTGGCTTGTGTTAGCTTCTCTCCCTCCTTCAACTCTGGAAGAGAAGTGGCTTGTAAATTCCTACAGGTTTCTAAATCCAGCTATACAACTCTGGCCAAGTGACAAATACAGAACTGTACTTGATGAAGTTTTCAAAAGCATGAGAGAAGATGTAAGAGCATTGTTAGAACAGGTTTCTTCCAAGTTCTCCATCACACTTGATTTCTGGACTTCCTTTGAACAGATCTTCTATATGAGTGTAACATGTCAGTGGATTGATGAAAACTGGTGCTTCCAGAAGTTGCTTCTTGATATCTGCCGCGTACCCTATCCATGTGGGGGTGCAGAGATCTATCGTTCCCTCATAAAAGTTCTTAAATTTTACAATATTGAAAACAGAGTCTTGTCATGTACCCATGATAATAGTCCAAGTGCCATGCATGCTTGCCATACTTTGAAAGAGGAGTTGGATGGTCAGAAAATAGGGCCATTCTGTTATATTCCCTGCGCTGCTAGAACTTTGAACCTGATAATAGATGATGGATTGAGATCCGCAAAACAAGTGATTTCTAAGATCCGGGAGTTTGCAATAGAGTTAAATGCCTCAACAGTGATTTCTGAGGATTTTATTCAATTTTCTACAGCTTATCAAGAAGGTACTTGGAAATTTCCTCTTGATGTTTCAGCAAGGTGGAGTGGAAACTACCAGATGCTTGATCTTGTTCGCAAGGCTGGTAAATCAGTGGATGCTGTTATTCGTAAATATGATGAGATGCTAGGCAGTAGGATGCTGCTGAGCTCTTCTGACAAAAGTGTGGTTAACATCATGCATCAATATCTTGAACCATTCTACAAAACCACAAACAATATCTGCACGAGTAAGGTGCCAACAGTTGGGCTTGTCCTTTTCTTCATGGATCACATATCAGAAACGATTGCAACCTGCAGAGAATCACGTCACAGCCCAGAATGGCTAAAAGGTGCTGCAGAAGAAATGGCTAAAAGGGCCAGAAATTATATTAATCAGGTTTGCAACATATTTACGTATATGACAGCAATTCTAGATCCTCGAATAAAGGGAGAGCTGATCCCTGATAGTTTAAACTCAGAAAATTTTCTGGACGAAGCAAGAACCCATTTTATGAGGAATTATTCTACTAGTCATTTCTCATCTATGAGTTCTGCATACAATGCTCAAGAAGTCGAAGATGGAGGAAGTGTTTCCTTTGCTGAGGAAATAGCTCGCAAGAAACGAAGGACAAGCATGAGCTCTGCCACCGATGAGCTTACACAGTACCTTTCAGAGGCTCCAGCTCCTATACCAACTGATGTTCTAGAGTGGTGGAAGGTCAACAGTACACGCTACCCTCGACTCTCTGTGATGGCTAGAGATTTCTTGGCTGTACAGGCAACTTCAGTTGTGCCTGAAGAACTCTTCTGTGGCAAGGGTGATGAAATTGACAAGCAACGATTCTGTATGCCACATGATAGCACACAGGCTATTCTTTGTATAAAGTCATGGATTCAAGTTGGCATCAAGTTTAAGTTTAAGTCGACTGAGATAGACTATGAGAGGTTGATGGAACTAGCAGCTGCTGCTGCTGCAACAGATAATAGCCCTGCGAGTTCTGAGAAGAAGCAAAAGTAA 2598 0.4253 MDVRNIAVVVEDVDAARTALIWALHNIIRYGDIITLLHVYPFTRSKTKNKARLLRLKGFHLALSFQDICNNFSNTKVEIVVTEDDREGMKIVATVREIGASMLVVGLHDHSFLYNLAMGHNSIGSYFNCRVLAIKQQPESPLSTMVSAVGVLDSSTEMDFSQIHISRLQVPDTPPPKVKYRICPDPGAIIWRFRRSSRRRQVTVGGDYMDWGVNNHYRTYKEKPIPVTSLKPRKKTMTSVYLKFFETAADGKTRRCKFCGQTYSIATATGNLGRHLANRHPGYDKSGDAVNNSAARPTAVVKKSQPQGKANQVDYDHLNWLLIRWLVLASLPPSTLEEKWLVNSYRFLNPAIQLWPSDKYRTVLDEVFKSMREDVRALLEQVSSKFSITLDFWTSFEQIFYMSVTCQWIDENWCFQKLLLDICRVPYPCGGAEIYRSLIKVLKFYNIENRVLSCTHDNSPSAMHACHTLKEELDGQKIGPFCYIPCAARTLNLIIDDGLRSAKQVISKIREFAIELNASTVISEDFIQFSTAYQEGTWKFPLDVSARWSGNYQMLDLVRKAGKSVDAVIRKYDEMLGSRMLLSSSDKSVVNIMHQYLEPFYKTTNNICTSKVPTVGLVLFFMDHISETIATCRESRHSPEWLKGAAEEMAKRARNYINQVCNIFTYMTAILDPRIKGELIPDSLNSENFLDEARTHFMRNYSTSHFSSMSSAYNAQEVEDGGSVSFAEEIARKKRRTSMSSATDELTQYLSEAPAPIPTDVLEWWKVNSTRYPRLSVMARDFLAVQATSVVPEELFCGKGDEIDKQRFCMPHDSTQAILCIKSWIQVGIKFKFKSTEIDYERLMELAAAAAATDNSPASSEKKQK. 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01226 865 CDD USP_Like 5 122 - -
Seca12g01226 865 SMART bed5 236 283 - -
Seca12g01226 865 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 200 - -
Seca12g01226 865 SUPERFAMILY Ribonuclease H-like 372 827 IPR012337 -
Seca12g01226 865 Pfam BED zinc finger 243 281 IPR003656 GO:0003677
Seca12g01226 865 Pfam hAT family C-terminal dimerisation region 745 825 IPR008906 GO:0046983
Seca12g01226 865 Pfam Universal stress protein family 4 122 IPR006016 -
Seca12g01226 865 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 135 - -
Seca12g01226 865 Pfam Domain of unknown function (DUF4413) 608 687 IPR025525 GO:0003677
Seca12g01226 865 Gene3D HUPs 2 137 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01226 Seca-Chr12 12028121 12038742 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01226 - - ahf:112708868 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01226 12 12028121 12038742 Seca12g01226 12 12028121 12038742 ECH