Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01218 ATGGCGAAGCCTCGCAAGCCCAAGAATGAAGACCCCAAACCTGAAAACTCAGGTGCCCTAGTTCACCACCAAAAGCTCTGCCTCTCCATCGACATGGACAAACGCCAAGTCCACGGGTACACTGAATTGGAAATTGCGGTGCCGGAGATTGGGATCGTAGGGTTGCACGCGGAGAATTTAGGGATTGAAAGTGTTTGGGTTGATGGTGAGCCCACGGAGTTCGAGTATTACCCGCATCAACAGCAGCAGATGGAGGATGAAAAGAGATGGAGCTCGGTGTCTTCTCCTAGCTCTGCTGCTGATGCTGCTGCGTCAGTGTACTTGTCCGCTCTGGAGAAAGAACTCGTGCCCAATTTGCTCATTAATTGCTGTAAACCTAGTTTTAAGACTGAAAATGAACAGCAGGATCAACCCGTTTCTGAAAATGGGTTTCACTCCTCTGCCGAGCAGCCCAAGCAGAATGTGAGATTTGTGCGTATTGACTATTGGATAGAAAAGGCAGAGACAGGAATCCACTTCAGAGATAATGTTCTTCATACTGACAACCAGATAAGGAGAGCAAGATGTTGGTTCCCTTGTATAGATGACAATTCACAGCGATGCTGCTATGACCTGGAGTTCACTGTGGCTCACAATCTTGTGGCTGTCAGTACTGGAAGCTTGTTATATCAGGTCTTAAGCAAGGACAATCCTCCTCGGAAAACATATGTCTATAAATTGGATGTTCCAGTTGCTGCAAGGTGGATATCTTTGGCTGTTGCCCCATTTGAAATTCTTCCTGATCACCAATTTAGTCTCATATCACATATGTGCTTGCCATCTAATCTGGCAAAGATGCGGAATACAGTGGAATTTTTTCATAGTGCCTTCAGCTGCTATAAGGATTATCTTTCTGTAGACTTCCCGTTTGATTCATATAAGCAAGTTTTCATAGAGCCTGAGATGGCAGTTTCATCATTAAGTTTGGGAGCCTCTATGAGTATATTTAGTTCTCAAGTTTTGTTTGATGAGAAGGTTATTGACCAGACTATTGATTCAAGGGTAAAGCTTGCATATGCCCTTGCAAGACAGTGGTTTGGTGTGTATATCACTCCTGAAGCACCAAATGATGAGTGGCTCTTGGATGGGCTTGCAGGTTTCTTGACAGATTATTTTATTAAGAAACATTTAGGAAATAATGAGGCACGGTACCAGAGATACAAGGCAAATTGTACTGTTTGCAAAGTTGATAATAGTGGAGCGACAGCTTTAAGCTGTTCAGCTTCCTGTAAGGATTTATATGGAACACAATGCATTGGTTTGTATGGAAAAATAAGATCATGGAAGTCTGTGGCAGTTCTTCAGATGTTGGAAAAGCAAATGGGTCCTGAATCTTTCCGTAGAATTTTGCAAACTATAGTTTCTCGGGCTCAAGATAAATCACGTTCCATGAAAACACTTAGTACTAAGGAGTTTCGACATTTTGCTAATAAGGTTGGAAATCTTGAACGTCCATTTCTTAAAGATTTCTTCCCTCGGTGGGTCGGTACTTGTGGATGTCCTGTTTTAAGGATGGGTTTTTCCTATAACAAAAGGAAGAATATGGTGGAATTGGCTGTGTTGCGGGGATGCACAGCATTGCAGACTTCAAGTACATCTGTTCTTGATATTAATCCAGATACTGAAAATCGAGATGGAGATACTGGATGGCCTGGTATGATGAGTATAAGGGTATATGAACTTGATGGTATGTATGACCATCCAATTCTACCGATGGCTGGAGAAGCATGGCAGCTATTGGAAATACAATGCCACTCAAATCTTGCTGCTAGACGCTTTCAGAAGCCTAAGAAAGGTTTGAAACTTGATGGATCTGATGATAATGGTGACGTGCCTTCCATGGATATGCGCTCCAGTACTGAGTCCCCTTTATTATGGATCAGAGCAGATCCTGACATGGAGTACCTTGCTGAGGTTCATTTTAATCAACCAGTTCAGATGTGGATTAATCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCACAGGCAATTGCAGCCCTTGAAGCATCACCTCAGCTATCATTTTCTGTTGTAAATGCCCTAAACAATTTTCTCACTGACTCCAAGGCATTTTGGAGAGTAAGAATCGAAGCAGCATTTGCATTGGCAAATTCAGCATCTGAGGAAACTGATTTTTCTGGTCTACTCCATTTGGTGAAATTTTACAAGAGTCGAAGGTTTGATTCTGACATTGGACTCCCAAAGCCAAATGATTTTCATGATTTTGCGGAATATTTTGTTCTTGAGGTAATGCAAGGAGGTAGGGTGTGTATGAAGTTACGCCTGATGTCAAGTGATTGA 2343 0.4234 MAKPRKPKNEDPKPENSGALVHHQKLCLSIDMDKRQVHGYTELEIAVPEIGIVGLHAENLGIESVWVDGEPTEFEYYPHQQQQMEDEKRWSSVSSPSSAADAAASVYLSALEKELVPNLLINCCKPSFKTENEQQDQPVSENGFHSSAEQPKQNVRFVRIDYWIEKAETGIHFRDNVLHTDNQIRRARCWFPCIDDNSQRCCYDLEFTVAHNLVAVSTGSLLYQVLSKDNPPRKTYVYKLDVPVAARWISLAVAPFEILPDHQFSLISHMCLPSNLAKMRNTVEFFHSAFSCYKDYLSVDFPFDSYKQVFIEPEMAVSSLSLGASMSIFSSQVLFDEKVIDQTIDSRVKLAYALARQWFGVYITPEAPNDEWLLDGLAGFLTDYFIKKHLGNNEARYQRYKANCTVCKVDNSGATALSCSASCKDLYGTQCIGLYGKIRSWKSVAVLQMLEKQMGPESFRRILQTIVSRAQDKSRSMKTLSTKEFRHFANKVGNLERPFLKDFFPRWVGTCGCPVLRMGFSYNKRKNMVELAVLRGCTALQTSSTSVLDINPDTENRDGDTGWPGMMSIRVYELDGMYDHPILPMAGEAWQLLEIQCHSNLAARRFQKPKKGLKLDGSDDNGDVPSMDMRSSTESPLLWIRADPDMEYLAEVHFNQPVQMWINQLEKDKDVIAQAQAIAALEASPQLSFSVVNALNNFLTDSKAFWRVRIEAAFALANSASEETDFSGLLHLVKFYKSRRFDSDIGLPKPNDFHDFAEYFVLEVMQGGRVCMKLRLMSSD. 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01218 780 FunFam Transcription initiation factor TFIID subunit 261 512 - -
Seca12g01218 780 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 18 254 IPR042097 -
Seca12g01218 780 MobiDBLite consensus disorder prediction 1 20 - -
Seca12g01218 780 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 268 517 - -
Seca12g01218 780 FunFam Transcription initiation factor TFIID subunit 2 105 253 - -
Seca12g01218 780 CDD M1_like_TAF2 23 508 - -
Seca12g01218 780 MobiDBLite consensus disorder prediction 1 18 - -
Seca12g01218 780 Gene3D Neutral Protease Domain 2 263 512 IPR027268 -
Seca12g01218 780 Pfam Peptidase family M1 domain 284 482 IPR014782 GO:0008237|GO:0008270
Seca12g01218 780 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 763 IPR037813 GO:0005669
Seca12g01218 780 MobiDBLite consensus disorder prediction 611 630 - -
Seca12g01218 780 Gene3D tricorn interacting facor f3 domain 19 253 IPR042097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01218 Seca-Chr12 11955545 11971956 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01218 K03128 - gmx:100792795 1429.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01218 12 11955545 11971956 Seca12g01218 12 11955545 11971956 ECH