Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01215 ATGATAACCCTAACTGCTGCAATGGGTGAAAACCTCGGAGACCTCAATAATAAACTCCCTGAGCTCAAATTAGATTCTAAGCAAGCACAAGGGTTTCTATCATTTTTCAAAACCCTACCTGACGACCCAAGGGCTGTTCGGTTTTTTGATCGCCGGGACTATTATACTGCTCACGGTGAGAATGCAACTTTCATTGCCAAGACTTACTACCATACTACTACTGCTTTGCGACAACTGGGTAGTGGGTCAGTTGCTCTTTCCAGTGTAAGTGTCAGTAGGAACATGTTTGAAACAATTGCCCGTGATCTACTTTTGGAGAGAACAGACCATACTCTTGAGGTCTATGAGGGCAGTGGTTCTAATTGGAGACTAGTCAAAAGTGGAACACCTGGTAATATTGGCAATTTTGAAGATGTTCTGTTTGCCAACAGTGAAATGCAAGATTCTCCAGTTGTTGTTGCACTGTCACTTAACTTCCGTGAAAATGGGTGCACCATTGGGTTAGGATTTGTTGATCTAACTAAGAGAGTACTTGGGATGGCTGAATTCCTTGATGACAGTCACTTCACAAACGTGGAGTCAGCTTTGGTTGCTCTTGGTTGCAAAGAGTGCCTTGTTCCCATGGAGTCTGGCAAATCTATTGAAAATAGAATGTTGTGTGATGTGTTGACTAAATGTGGTGTGATGTTAACTGAGAGAAAGAAATCTGAGTTTAAAACCAGAGATCTGGTACAGGATCTTGGCAGGCTTGTTAAAGGTTCTATTGAATCAGTTCGAGATTTAGTGTCTGGATTTGAATTTGCACCTGGTGCTTTGGGGGCATTACTATCTTATGCCGAGTTACTTGCAGATGAAAGCAATTATGAAAATTATACTCTTCGCAGGTACAATCTTGACAGTTACATGAGGTTAGATTCTGCAGCCGTGAGGGCACTTAATGTCTTGGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTCATGAATAGAACCTGTACAGCTGGAATGGGAAAACGGTTATTGCACAACTGGCTAAAACAACCATTATTAGATGAAAAAGAAATTAATTCCCGGCTGGATGTAGTACAAGCATTTGTGGAGGACACTGTTCTTCGCCAAGATCTGAGGCAGCATCTGAAAAGAATATCAGACATTGAGCGATTGGTACACAATCTTCAGAGGCAAAGAGCTGGTCTGCAACATATTGTTAAACTTTATCAGTCTACTATAAGATTACCCTACATTAAAATCGCTCTGGAAAGGTATGATGGGCAATTTTCCTCAATGATGAAGAGCAGGTATTTGGAACCTCTTGAGTCATGGACTGATGATGATCACCTAAACAAATTCATTGCGCTTGTAGAAGCTTCTGTTGACCTTGATCAACTGGAGAACAGGGAATACATGATTTCTTCAAGTTATGACTCTACACTAACTAAACTAAAGGAGCAGCAAGAATTACTAGAAAGCCAAATACATAACTTACATAGACAGACTGCTGATGATCTTGATCTTCCTATAGATAAGGCATTAAAATTAGACAAAGGGACACAATTCGGACATGTTTTCAGAATCACAAAGAAGGAAGAGCCAAAAATAAGGAAGAAGCTTAACTCCCAGTTTATTGTACTAGAAACCCGTAAAGATGGGGTGAAGTTTACCAACACAAAGCTCAAAAAATTGGGGGACCAGTATCAACAAATTCTTGAGGAGTACAAGAGTTGTCAAAAAGAGTTGGTTAATAGAGTAGTTCAAACTGCAGCAACTTTCTCTGAGATCTTTGAATCTTTGGCTGAATTAATTTCAGAATTGGATGTGTTACTAAGCTTTGCTGATTTGGCTTCTAGTAGTCCTACTCCCTACACAAGACCTGACATCACTTCATCGGACGAAGGAGATATTATTTTAGAAGGCAGCAGACACCCTTGTGTAGAGGCACAGGAGTGGGTGAATTTCATACCAAATGATTGTAAGCTTATCAGAGGAAAAAGTTGGTTTCAAATAATAACAGGGCCTAACATGGGTGGGAAATCAACATTCATTCGGCAGGTGGGCGTGAATATTTTGATGGCACAAGTAGGTTCCTTTGTTCCTTGTGACAAAGCCAGCATATCTGTTCGTGATTGCATTTTTGCTCGTGTTGGTGCAGGTGACTGCCAACTTCGTGGAGTTTCTACCTTTATGCAAGAAATGCTTGAAACTGCATCAATATTAAAAGGAGCTACTGACAAGTCCTTGATAATCATTGATGAGTTGGGACGTGGGACATCAACTTATGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCACATTGTTGAAGTGATCAAAGCACCTACTTTGTTTGCAACCCACTTTCATGAACTGACTGCATTAGCCCTTGAAAATAAAAGCAATGATCCACATAAGCAAATTGTTGGTGTGGCAAATTATCATGTCAGTGCACATATTGATGCATCAACTCGCAAGCTAACCATGCTATACAAGGTTGAACCAGGAGCTTGTGATCAGAGTTTTGGTATTCATGTTGCTGAGTTTGCAAACTTCCCTGAAAGTGTTGTTGCCCTAGCTAGAGAAAAGGCAGCAGAATTGGAAGATTTTTCTCCTTCTGCAATATCCTTAATTGATCCTACAGAAGAGGTGGGTTCTAAACGTAAGAGAGTAATGGAACCTGATGACATGTCTCAAGGAGCTGCAAGGGCTCGCCAAATTCTTGAAGCATTTGTTGCTTTGCCACTAGAAACCATGGATAAAAGGCAAGCTTTGCAAGAAGTAAGGAAGTTAAAAGATACTTTAGAGAAGGATGCAGAAAACTGTCATTGGCTGCAAAAATTTTTGTAG 2850 0.4039 MITLTAAMGENLGDLNNKLPELKLDSKQAQGFLSFFKTLPDDPRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGSGSVALSSVSVSRNMFETIARDLLLERTDHTLEVYEGSGSNWRLVKSGTPGNIGNFEDVLFANSEMQDSPVVVALSLNFRENGCTIGLGFVDLTKRVLGMAEFLDDSHFTNVESALVALGCKECLVPMESGKSIENRMLCDVLTKCGVMLTERKKSEFKTRDLVQDLGRLVKGSIESVRDLVSGFEFAPGALGALLSYAELLADESNYENYTLRRYNLDSYMRLDSAAVRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHNWLKQPLLDEKEINSRLDVVQAFVEDTVLRQDLRQHLKRISDIERLVHNLQRQRAGLQHIVKLYQSTIRLPYIKIALERYDGQFSSMMKSRYLEPLESWTDDDHLNKFIALVEASVDLDQLENREYMISSSYDSTLTKLKEQQELLESQIHNLHRQTADDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLNSQFIVLETRKDGVKFTNTKLKKLGDQYQQILEEYKSCQKELVNRVVQTAATFSEIFESLAELISELDVLLSFADLASSSPTPYTRPDITSSDEGDIILEGSRHPCVEAQEWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALALENKSNDPHKQIVGVANYHVSAHIDASTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSPSAISLIDPTEEVGSKRKRVMEPDDMSQGAARARQILEAFVALPLETMDKRQALQEVRKLKDTLEKDAENCHWLQKFL. 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01215 949 Gene3D DNA repair protein MutS, domain I 16 129 IPR016151 GO:0005524|GO:0006298|GO:0030983
Seca12g01215 949 FunFam DNA mismatch repair protein 15 129 - -
Seca12g01215 949 Pfam MutS family domain IV 477 574 IPR007861 GO:0005524|GO:0006298|GO:0030983
Seca12g01215 949 FunFam DNA mismatch repair protein MSH2 521 624 - -
Seca12g01215 949 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 64 869 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Seca12g01215 949 Coils Coil 561 581 - -
Seca12g01215 949 Coils Coil 378 398 - -
Seca12g01215 949 Gene3D - 530 624 - -
Seca12g01215 949 Gene3D - 302 529 - -
Seca12g01215 949 Gene3D MutS, connector domain 130 299 IPR036678 GO:0005524|GO:0006298|GO:0030983
Seca12g01215 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 869 IPR027417 -
Seca12g01215 949 Pfam MutS domain I 31 136 IPR007695 GO:0005524|GO:0006298|GO:0030983
Seca12g01215 949 CDD ABC_MSH2_euk 638 868 IPR032642 GO:0005524
Seca12g01215 949 Pfam MutS domain III 308 614 IPR007696 GO:0005524|GO:0006298|GO:0030983
Seca12g01215 949 Coils Coil 921 941 - -
Seca12g01215 949 SMART DNAend 322 650 IPR007696 GO:0005524|GO:0006298|GO:0030983
Seca12g01215 949 Pfam MutS domain V 670 868 IPR000432 GO:0005524|GO:0006298|GO:0030983
Seca12g01215 949 Gene3D - 625 946 IPR027417 -
Seca12g01215 949 FunFam DNA mismatch repair protein 130 299 - -
Seca12g01215 949 PIRSF MSH2 15 949 IPR011184 GO:0005524|GO:0006298|GO:0030983
Seca12g01215 949 FunFam DNA mismatch repair protein 302 519 - -
Seca12g01215 949 FunFam DNA mismatch repair protein MSH2 625 945 - -
Seca12g01215 949 Coils Coil 481 501 - -
Seca12g01215 949 Pfam MutS domain II 151 291 IPR007860 GO:0005524|GO:0006298|GO:0030983
Seca12g01215 949 ProSitePatterns DNA mismatch repair proteins mutS family signature. 748 764 IPR000432 GO:0005524|GO:0006298|GO:0030983
Seca12g01215 949 SMART mutATP5 667 865 IPR000432 GO:0005524|GO:0006298|GO:0030983
Seca12g01215 949 SUPERFAMILY DNA repair protein MutS, domain III 305 619 IPR036187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01215 Seca-Chr12 11889565 11907905 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01215 K08735 - gmx:100792272 1720.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01215 12 11889565 11907905 Seca12g01215 12 11889565 11907905 ECH