Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01207 ATGGGTACTGGAGCACTTGAAATGAATCGTAAAACAAGTAGGGAAGCTGAGAACAGTCTTCACAAGCAAGCTGATCAAGCTCCTTCTGAAGGGTTTATAGGAAGAGGTGAGAACTTGCTTTCTGATGGCAATGACGCAGTTGCAGACCATACTGAGGAGCTGTCTCACTCACACACCCTTCAACTTGAAGCCATGGCACACCCTGATGCTCCAAAAAGGGCCAGGCTGCAGAAAGAATTAACTTTCCAGGACATGTATGAAAATGAAGGCATGTTTGATGATGAGGATGAGGATGACGATGATTGGGAGCCGTTTCAGTTACACAAGTGTATGGAAGTAGCAAAGTGGTTCTGCAAAAATTGTACTATGGTTAACCTAGACAATGTTGTCCATTGCAATATATGTGGGGAGCATAAAGATTCTAAAATCCTTAGCTGTGGGTTTTTTGCATCTCCCTTTGCACAAGATGAGGATCTGCCTGAGGTCCAGCCTAATACAAAAGGACTGAAAGATGCTTGCTTACAAGAATCAGCGACAAATAGTTCTACGGCAATTGGCTTTGATGAGAGAATGTTGTTACATTCAGAAGTTGAAATGAAATCACATCCACACCCTGAAAGGCCAGATCGTCTTCGAGCCATTGCTGCTAGTCTTGCTAGAGCTGGTATATTTCCTGGAAGATGCCATTCAATTTCTGCTAGGGAAATCACTCGAGAAGAACTTACTATGGTTCATTCCTTGGAGCATATTGAATCTGTTGATGTTACAAGCAATTTATTATCCAGTTATTTCACATCTGACACATATGCCAATGAGCATTCAGCATGTGCTGCTAGGTTGGCAGCTGGCTTATGTGCTGATCTGGCATCAGAAATTGTTTCTGGGCGTGCCAAAAATGGATTTGCTTTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACATGCAATGGGATTCTGCCTTCACAATAATGCTGCAGTGGCAGCATTGGCAGCTCAGGCTGCAGGGGCTAGGAAGGTGCTAATTTTAGATTGGGATGTTCATCATGGAAATGGGACACAAGAAATATTTGATCAAAACAAATCAGTCTTGTATATATCGTTGCATAGACATGAGGGAGGAAATTTTTATCCTGGTACTGGAGCTGCTGATGAGGTTTTATGGATGAAAATTGGTTATTTAGAGCTCAGAGTGATGTTCCCCATAAACTTCTGGAAGGTTGGTAGTATGGGTGCAGAAGGATACTGTGTGAATATTCCATGGAGTCGAGGAGGAGTTGGTGACAATGATTACAGTTTTGCATTTCAGCATGTTGTCCTTCCTATAGCTTCTGAGTTTGCTCCAGATTTTACCATAATATCAGCTGGATTTGATGCTGCAAGAGGTGATCCCCTAGGATGTTGTGATGTTACTCCCTCTGGCTATGCATATATGACACACATGCTAAATGCCCTTTCTGGTGGAAAATTGCTTGTTATTCTTGAGGGGGGGTATAATCTCCGTTCTATATCATCTTCTGCAACAGCAGTGATCAAGGTATTGCTGGGTGAGAGTCCTGGATGTGAACTAGAAAATAGTTTCCCTTCCAAATCTGGCTTGCAAACTGTTCTGGATGTCCTCAAAATTCAGATGAAATTTTGGCCTTCTTTGGGACCTATCTTTTCAAATTTGCAGTCACAATGGAGAATGTACTGTCTTGGAAAAAAAAGAAAACAGATTAAGAAGGGACGCCGAGTCCTGGTACCAATGTGGTGGAGGTGGGGGCGAAAAAGTTTCTTATTCCACTTCCTGAACAGCCATCGTCATGTAAAATCAAAGGGATTTTGTTGA 1830 0.4257 MGTGALEMNRKTSREAENSLHKQADQAPSEGFIGRGENLLSDGNDAVADHTEELSHSHTLQLEAMAHPDAPKRARLQKELTFQDMYENEGMFDDEDEDDDDWEPFQLHKCMEVAKWFCKNCTMVNLDNVVHCNICGEHKDSKILSCGFFASPFAQDEDLPEVQPNTKGLKDACLQESATNSSTAIGFDERMLLHSEVEMKSHPHPERPDRLRAIAASLARAGIFPGRCHSISAREITREELTMVHSLEHIESVDVTSNLLSSYFTSDTYANEHSACAARLAAGLCADLASEIVSGRAKNGFALVRPPGHHAGVRHAMGFCLHNNAAVAALAAQAAGARKVLILDWDVHHGNGTQEIFDQNKSVLYISLHRHEGGNFYPGTGAADEVLWMKIGYLELRVMFPINFWKVGSMGAEGYCVNIPWSRGGVGDNDYSFAFQHVVLPIASEFAPDFTIISAGFDAARGDPLGCCDVTPSGYAYMTHMLNALSGGKLLVILEGGYNLRSISSSATAVIKVLLGESPGCELENSFPSKSGLQTVLDVLKIQMKFWPSLGPIFSNLQSQWRMYCLGKKRKQIKKGRRVLVPMWWRWGRKSFLFHFLNSHRHVKSKGFC. 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01207 609 ProSitePatterns Zinc finger RanBP2-type signature. 116 135 IPR001876 -
Seca12g01207 609 SUPERFAMILY Arginase/deacetylase 180 548 IPR023696 -
Seca12g01207 609 Pfam Histone deacetylase domain 204 513 IPR023801 -
Seca12g01207 609 FunFam Histone deacetylase 15 176 571 - -
Seca12g01207 609 Gene3D Histone deacetylase domain 176 572 IPR037138 -
Seca12g01207 609 PRINTS Histone deacetylase superfamily signature 448 458 IPR000286 -
Seca12g01207 609 PRINTS Histone deacetylase superfamily signature 306 329 IPR000286 -
Seca12g01207 609 PRINTS Histone deacetylase superfamily signature 339 354 IPR000286 -
Seca12g01207 609 MobiDBLite consensus disorder prediction 1 56 - -
Seca12g01207 609 CDD HDAC_classII 204 515 - -
Seca12g01207 609 PANTHER HISTONE DEACETYLASE 9-RELATED 103 386 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01207 Seca-Chr12 11846302 11856246 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01207 - - gmx:100804724 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01207 12 11846302 11856246 Seca12g01207 12 11846302 11856246 ECH