Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01199 ATGGCACAAGAAAAGGCAAGTCATGTTTTTTACCAAGTGGCATTCCTCATTGTCTTCTTAGCTTTGGCCTCTTCTGGCTCTGGAGTTGGAGTGAATTGGGGAACCATGGCAACTCACCAGCTTCCACCAAATAAGGTTGTTAAGATGCTTCAAGAAAATGGTTTTGATAAATTGAAGCTGTTCGATGCAGATGAGTGGATTATGGCAGCTCTGTTGGGGACTGATATTGAAGTGATGTTGGCAATACCCAATAACATGTTGGAGGATATGAGTAAGAATCCAAAAGCTGCAGATTCTTGGGTTTATGAAAATGTCACCAGTTACTTGTACCCTGGTGGACTAAATATCAAGTATATTGCTGTGGGTAATGAGCCTTTCCTTAAGGAATATAATGGTACCTATTTACAGTCAACTCTGCCAGCTCTTATGAATATACAAACATCACTCAATAAAGCTGGCCTTGGTTCAAAGATCAAAGCCACTGTTCCTTTCAATGCTGATGTTTACTATTCCCCTGACTCAAATCAAGTTCCATCAGCAGGTGACTTCAGACCTGAAGTAAAAGACCTGACAATTGAAATAATACAGTTCTTGTATTCAAACAATGCACCCTTTACTGTCAATATCTATCCTTTCCTCAGTCTTTATGGAAATGATCATTTCCCCTTTGATTTTGCTTTTTTTGATGGAAGTAACAAGGTTCTTATAGATGGCAATTCAGTTTATACCAATGTGTTTGATGCAAATCTTGACACTCTTTATTGGGCCTTAGAGAAGACAGGATATCCAGACATGCATGTTATAGTTGGAGAAGTTGGATGGCCAACTGATGGTGATAAGAATGCTAATGTACAAAATGCAAAAAGGTTCAATATGGGTTTGCTTAAGCATGCTTTGAGTGGAAATGGTACTCCTAAAAGGAAAGGCATAATTGACATTTATTTATTCAGTTTGATTGATGAGGATGCTAAAAGTATTGCTCCTGGCAACTTTGAGAGGCATTGGGGAATTTTTGAGTTTGATGGGAAGCCAAAGTATGAATTAGACTTGAGAGGTCTTGAAGAGGATAAGGGTCTAGTCCCTGTGGAGGGTGTGAAGTACATGGAAAAACAATGGTGTATCTTGGATCCAGATGCTACAGAGTTGCACTACTTGGCTGAGAGTATTGACTATGCTTGTAGCCTATCTGATTGCACTGCTTTAGGCTATGGATCTTCTTGTAATGGTTTAACTCTTCAAGGGAATGCTTCTTATGCCTTTAATATGTATTATCAAGTACATAATCAGAGGGATTGGGACTGTGATTTCTCTGGTTTGGCTATCTTAACAGATGAGAATCCATCAGAAAAGGGATGCCAATTCCCTGTGATGATCTCTCATGGTTCTACTTTGCTGCTGCATCAGCATGAAGGGCTTTCTGACATCCTAATGAAAGCTTTCTGTGCAATGAACTCCGACACCCGCGTCACCGGCGACCACCGTTCCCCTCTCCTTCAAGTCATCGGAATCGTCCCTGCCCTAGCGGGATCCGACTTATGGTCCAATCAGGGTTTCTACCTCAACCTCTCTGATTCCCTCAATTCCACCTACGTCCTTCTCTCTCACCCTGACACCGATCTCATCCTCTCTAACCGTCTCCAATTGGGCCAATTCATCTACGTTGATCGTTTCCATTTCCATTCTCCTCTTCCCTCCGTTTCCTCCATTCGCCCCCTCTCTGGCCGCCACCCTTTCCTCGGAACCCCTGAACCTCTCATCGCTCGAATCAACCCTTCCACTCGCCACTTCATCATCCAACCCCTCTCTGATAATTCCTCTGACCCTCTTTCTCTGTATCTCTCCACCAACCCTCCATCAGACACCAATCCCAACACAACAAAAACAACCACCACCGAACCACCACCACAGAAGGTTAGTTCCAGGCAACCCCTTGCTCCACGAGACAACTTGCCCGCGCCGCAGAGATTCTCTTCGCCGGCGACGGCGAAGAGGTCGCAGTCCGCCGGGAGGAGCAAGAATGTTCCTGCTGTTGCTGTGGCGGAGAGGGATCCTTCGCCTGCCGGGAAGGTGAAGAGGTCGGCGTCTCCGGTGCCGTCGAAATGTGTGGTTCCGAGCTTGGTCTCTGCTCGCGAGGAGAACCGGAAGGTGTCTCGGGAGGCGGCGATTATTGTGCCGTCGAGGTACCGGCAGCCGTCGCCGAATGGGAGGAAGCAACCGTCGCCGAATCCAAGGAGGGCTTCGATTTCTCCAGGGAGAAGGTTGTCTGGGGTTTTGAAGTTTTCGCCGGCAGTGGTGGATTCCTCCGGGAAAAAGAAAATGATCGCCGGAATTTCTAAGATCTCTGATGCGCTGGTTGGATCCGCGGCGAAGCCTGGGAGAAAGAGCTGGGATGAGCAACCTGTTGAGGCTGTTGAACCCAAAGAAAAGGCTGCTTCATCTAAGAACAAGGTTGACCCTCAAGCAATTTTGCGTACTCAGGCTGCAATGTCAAGGCGATTAAGTGATGTGAATGGTCAAAAAGCCAGTAGCAATGATTCTTCCACCAATGAGAAAACTAAAACTGGTTCTCCTCAGAGTTGTTTGGAGCAAGAGAAGTCCAATTTTGCAGCTCTGGGCATCATTTTTCATGAAAAGAAATGGACTGATGGAAGTGTTGCATTAGATGCAGTCTCTGCAAACCTTTCAAGGCTTGGAAAGGAAGCAATGCGAAGGAAAGTTCTTGCTTGCGCTGCTGCTGCTGAAGCATTAGAGGAGGCCAATGCTACTGAATGTATTATAAGAAATTTAAGCATGTTTTCAGACCTCTGCTCCGTGTGCCAAGCCAGAAATCCTTTGCCAACCATAGACAGATTTTTTACTATCTATGATGATGTTGTAAGATCAACTACAATGGCTGAATCTGTTGCCAATAGTCACAATTCTGAGACACCTGATGACAGCATTCCAACTGAGCAGTCAAAATCACTCTCTCTGTGGGTTGAAGCTGCCTTGGCCACTGATCTTCAGATAGTATCCCTTCTTTCTGGCACTGCCTCTGATCCTCCATCAACACTGCAAAAAAGCTTGTCAAAAAGACACTCTCTTAGTGCAGCTAAGAACCGAGGTAGTGGAATGAAAGAGACAGTGGAGCTTGGAACAAATTTGCTGTCTGAAATGCAAATGTGGTTTCTACGTTTTGTTGAAGAGTCCCTTGAAGCAGGATTTAAAGTGTTTGGAGAGTGTAATGCTGATGGGAAAAAAGCGTTGCCTCTGGATGGTGGCTCCATTGCTATAGTTCTGTCACATTTGAAGCGTGTAAATGCATGGCTGGACCGTGTGGTTTCCAAAGGGAATGACTCACTGACAGATAAGATTGAAAAATTGAAGAGGCAGATCTACGGTTTTGTTATTCAGCATGTCGGATCAACTTTCGATAATTCTGCTTCCCCTGCTTCATCCTGA 3441 0.4528 MAQEKASHVFYQVAFLIVFLALASSGSGVGVNWGTMATHQLPPNKVVKMLQENGFDKLKLFDADEWIMAALLGTDIEVMLAIPNNMLEDMSKNPKAADSWVYENVTSYLYPGGLNIKYIAVGNEPFLKEYNGTYLQSTLPALMNIQTSLNKAGLGSKIKATVPFNADVYYSPDSNQVPSAGDFRPEVKDLTIEIIQFLYSNNAPFTVNIYPFLSLYGNDHFPFDFAFFDGSNKVLIDGNSVYTNVFDANLDTLYWALEKTGYPDMHVIVGEVGWPTDGDKNANVQNAKRFNMGLLKHALSGNGTPKRKGIIDIYLFSLIDEDAKSIAPGNFERHWGIFEFDGKPKYELDLRGLEEDKGLVPVEGVKYMEKQWCILDPDATELHYLAESIDYACSLSDCTALGYGSSCNGLTLQGNASYAFNMYYQVHNQRDWDCDFSGLAILTDENPSEKGCQFPVMISHGSTLLLHQHEGLSDILMKAFCAMNSDTRVTGDHRSPLLQVIGIVPALAGSDLWSNQGFYLNLSDSLNSTYVLLSHPDTDLILSNRLQLGQFIYVDRFHFHSPLPSVSSIRPLSGRHPFLGTPEPLIARINPSTRHFIIQPLSDNSSDPLSLYLSTNPPSDTNPNTTKTTTTEPPPQKVSSRQPLAPRDNLPAPQRFSSPATAKRSQSAGRSKNVPAVAVAERDPSPAGKVKRSASPVPSKCVVPSLVSAREENRKVSREAAIIVPSRYRQPSPNGRKQPSPNPRRASISPGRRLSGVLKFSPAVVDSSGKKKMIAGISKISDALVGSAAKPGRKSWDEQPVEAVEPKEKAASSKNKVDPQAILRTQAAMSRRLSDVNGQKASSNDSSTNEKTKTGSPQSCLEQEKSNFAALGIIFHEKKWTDGSVALDAVSANLSRLGKEAMRRKVLACAAAAEALEEANATECIIRNLSMFSDLCSVCQARNPLPTIDRFFTIYDDVVRSTTMAESVANSHNSETPDDSIPTEQSKSLSLWVEAALATDLQIVSLLSGTASDPPSTLQKSLSKRHSLSAAKNRGSGMKETVELGTNLLSEMQMWFLRFVEESLEAGFKVFGECNADGKKALPLDGGSIAIVLSHLKRVNAWLDRVVSKGNDSLTDKIEKLKRQIYGFVIQHVGSTFDNSASPASS. 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01199 1146 MobiDBLite consensus disorder prediction 1011 1035 - -
Seca12g01199 1146 Gene3D - 366 460 - -
Seca12g01199 1146 MobiDBLite consensus disorder prediction 654 672 - -
Seca12g01199 1146 FunFam Glucan endo-1,3-beta-glucosidase 8 367 463 - -
Seca12g01199 1146 SMART X8_cls 371 454 IPR012946 -
Seca12g01199 1146 ProSitePatterns Glycosyl hydrolases family 17 signature. 265 278 IPR000490 GO:0004553|GO:0005975
Seca12g01199 1146 MobiDBLite consensus disorder prediction 731 745 - -
Seca12g01199 1146 MobiDBLite consensus disorder prediction 608 638 - -
Seca12g01199 1146 MobiDBLite consensus disorder prediction 795 814 - -
Seca12g01199 1146 Pfam X8 domain 371 440 IPR012946 -
Seca12g01199 1146 Pfam Glycosyl hydrolases family 17 29 349 IPR000490 GO:0004553|GO:0005975
Seca12g01199 1146 PANTHER EXPRESSED PROTEIN 474 1139 IPR010341 -
Seca12g01199 1146 MobiDBLite consensus disorder prediction 786 860 - -
Seca12g01199 1146 MobiDBLite consensus disorder prediction 608 754 - -
Seca12g01199 1146 Gene3D Glycosidases 28 356 - -
Seca12g01199 1146 FunFam Glucan endo-1,3-beta-glucosidase 5 28 356 - -
Seca12g01199 1146 Pfam Plant protein of unknown function (DUF936) 475 1139 IPR010341 -
Seca12g01199 1146 SUPERFAMILY (Trans)glycosidases 29 349 IPR017853 -
Seca12g01199 1146 MobiDBLite consensus disorder prediction 830 860 - -
Seca12g01199 1146 MobiDBLite consensus disorder prediction 1011 1030 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01199 Seca-Chr12 11793607 11804182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01199 11 458 Miscellaneous Gene Families AT2G19440 58.129 2.00e-179 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01199 - - gmx:100789274 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01199 12 11793607 11804182 Seca12g01199 12 11793607 11804182 ECH