Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01193 ATGGTGGCAACTGCTGCTACTTCTTCATTTTTCCCTGTTACTTCACCCTCGCCAGACTCTGGTGCAGCAGGCAGCAAACTTGGTGCTGGGCATGCGAACCTTGGAGGACTTAAATCCAAACATGGTGGCCTGAAAGTTAAGGCAAATGCTCAAGCCCCTCCTAAGATTAATGGAACCACAGTTGCTACATCTGTAGAAACCGTGAAGCATGAGGATGATTTGCCTTTGCCTTTGCCTTCGCCTTCCTCTTCCCCTAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCTATCACTACAATTTTCTTGGCAGCAGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGTATAGGAAAAATTGTTCAGGATGGTCTTGTATTCCGTGAAAACTTTTCTATAAGATCATATGAAATTGGTGCCGATCGAACAGCATCTATAGAGACAGTAATGAACCATTTGCAGGAAACTGCACTTAATCATGTTAAGAGTGCTGGGCTTCTTGGTGATGGCTTTGGTTCTACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACCCGGATGCAGGTGGTCGTTGATCGTTATCCTACGTGGGGTGATGTTGTTCAAGTAGACACTTGGGTTTCTGCATCGGGGAAGAATGGTATGCGTCGTGATTGGCTTTTACGTGACTGCAAAACTGGTGAAATCTTGACGAGAGCCTCCAGTATTTGGGTCATGATGAACAAACTGACCAGGAGGCTGTCAAAAATTCCAGAAGAAGTCAGAAAGGAGATAGGGTCATATTTTATGGATTCTACTCCAATTCTGGAAGAGGATAACAGAAAACTACCTAAACTTGATGACAATACAGCAGATTATATCCGTTCGGGTTTAAGTGTATGTCAACCTTTTTTTGTTATTGCTAATTTATTTTCTAAACTTACCTCAGATGATGTTTTCTAA 993 0.43 MVATAATSSFFPVTSPSPDSGAAGSKLGAGHANLGGLKSKHGGLKVKANAQAPPKINGTTVATSVETVKHEDDLPLPLPSPSSSPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWVSASGKNGMRRDWLLRDCKTGEILTRASSIWVMMNKLTRRLSKIPEEVRKEIGSYFMDSTPILEEDNRKLPKLDDNTADYIRSGLSVCQPFFVIANLFSKLTSDDVF. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01193 330 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g01193 330 Pfam Acyl-ACP thioesterase 139 295 IPR002864 GO:0006633|GO:0016790
Seca12g01193 330 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 136 288 IPR029069 -
Seca12g01193 330 CDD 4HBT 142 258 - -
Seca12g01193 330 MobiDBLite consensus disorder prediction 1 27 - -
Seca12g01193 330 FunFam Acyl-[acyl-carrier-protein] hydrolase 134 219 - -
Seca12g01193 330 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 55 309 IPR045023 GO:0006633|GO:0016297
Seca12g01193 330 Pfam Acyl-ATP thioesterase 1 128 IPR021113 GO:0016790
Seca12g01193 330 Gene3D Hotdog Thioesterase 132 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01193 Seca-Chr12 11697641 11703351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01193 1 309 Acyl Lipid Metabolism Gene Families AT1G08510 76.358 3.36e-163 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01193 K10781 - gmx:100170693 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01193 12 11697641 11703351 Seca12g01193 12 11697641 11703351 ECH