LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g01192	ATGATAAAGCAAATTCTTAGCAAACTGCCAAAGAAGGTGCCAAAATCTGACTCATCAGATTCTGCCAGGAGTAGTGATTCTGGCAATTCTACTAGTTTTGGGAACGTGTTTCAGTGTACAAATGTTGGAAGTACCATTTCAAGCAAGTTAAATGTTGTGAAGCGGGTATCTTCTGTTGTTTTTCCTGCAAGCATGAATGCTGGAGTGGAAGCAGTTGACCCTTGTCTATCCTTCAAAGATGTTTCAAATCAACAAAAGCAAAGCCTGTTTATTAGTAAGTTGAATCTTTGCTGCAAAGTTTATGATATGAGTGATCCTGATAAAAACTGTACAGAGCAAGATCTTAAACGTCAAACATTGCAAGAGCTTGTTGATTTTGTTTCTTCTGGATCAGTAAAGTTCACAGAACCAGTGATTGCAGCATTGTGTAAAATGTGTGCAACCAATTTGTTCAGGGTTTTCCCCCCCAAGTTTCGTACAAGTACTACTGGTGGAGAAACAGAAGATGAAGAACCTATGTTTGATCCTGCCTGGTCTCACCTGCAAATTGTGTATGATCTACTCCTTCAATTCATCAATTATAACTCTCTTGATGTGAAGGTGGCAAAAGCGCATGTAGATCATGCTTTTATTTTAAGATTACTTGAGCTTTTTGATTCTGAGGACCCTAGAGAAAGAGATTGCTTGAAAACAATTCTGCATAGAATCTATGGGAAATTCATGGTTCACAGGCCTTTTATACGGAAATCTGTTAGCAATATCATCTACCGGTTTGTTTTTGAGACTGAGCGGCATAATGGAATTGCTGAGTTGTTGGAGATTTTTGGGAGTGTTATTAGTGGGTTTGCCTTGCCATTGAAGGAAGAGCACAAAATATTTTTGTGGAAGGCTTTAATTCCATTGCACAAACCTAAATCTATTGGGATTTATCATCAGCAGTTAACATATTGTGTTGTACAGTTCATAGACAAGGATCAAAGACTGGCTAGCTCTGTGATAAAGGGACTATTAAAGTACTGGCCAGTAACTAATAGCCAGAAGGAGCTAATGTTCATTAGTGAGTTGGAAGAGATTTTGGAAATGACTAGCATGGCTGAATTTCAGAAGATTATGGTTCCACTGTTTCGAAGGATGGGTTGCTGCCTCAATAGTTCTCATTACCAGAGTTGTTCAAATGTCCAAGCATTTCAGATGCTTAGACATTGTTCTCTGGAAGATCACGCCTTGCAATTTCTAGTGGCTGAACGAGCTCATTTACTATGGAACAATGAGCACATCCTTAATCTTATCACACAAAACAGACAAGTGATTCTGCCACTTGTCTTCTCAGCACTTGTACATAACTCCCAAAACCACTGGAATCAAGCAGTGTTGAACCTGACTCAGAACATCAAGAAGATGCTGTCTCAAATGGATGAGGAACTGGTACTTGACTGCCAACGCAGGATTGAGGAAGAAGATTCAAAGTCAAGTGCTGTAGCAGAGAGGCGAAGAATAACATGGGAACGCCTAGAAGCAGCTGCAACAAGTGTTGAATCTGTAGGTGGTGGTGGTGGTGGTGATATATTAGTTCCAGTAAAATCTGCTACATGCTCAGTGGCCTGCTAA	1608	0.3993	MIKQILSKLPKKVPKSDSSDSARSSDSGNSTSFGNVFQCTNVGSTISSKLNVVKRVSSVVFPASMNAGVEAVDPCLSFKDVSNQQKQSLFISKLNLCCKVYDMSDPDKNCTEQDLKRQTLQELVDFVSSGSVKFTEPVIAALCKMCATNLFRVFPPKFRTSTTGGETEDEEPMFDPAWSHLQIVYDLLLQFINYNSLDVKVAKAHVDHAFILRLLELFDSEDPRERDCLKTILHRIYGKFMVHRPFIRKSVSNIIYRFVFETERHNGIAELLEIFGSVISGFALPLKEEHKIFLWKALIPLHKPKSIGIYHQQLTYCVVQFIDKDQRLASSVIKGLLKYWPVTNSQKELMFISELEEILEMTSMAEFQKIMVPLFRRMGCCLNSSHYQSCSNVQAFQMLRHCSLEDHALQFLVAERAHLLWNNEHILNLITQNRQVILPLVFSALVHNSQNHWNQAVLNLTQNIKKMLSQMDEELVLDCQRRIEEEDSKSSAVAERRRITWERLEAAATSVESVGGGGGGDILVPVKSATCSVAC.	536

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g01192	535	PIRSF	PP2A_B56	391	516	IPR002554	GO:0000159\|GO:0007165\|GO:0019888
	Seca12g01192	535	PIRSF	PP2A_B56	3	396	IPR002554	GO:0000159\|GO:0007165\|GO:0019888
	Seca12g01192	535	FunFam	Serine/threonine protein phosphatase 2A regulatory subunit	82	507	-	-
	Seca12g01192	535	Gene3D	-	82	507	IPR011989	-
	Seca12g01192	535	PANTHER	SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B	1	509	IPR002554	GO:0000159\|GO:0007165\|GO:0019888
	Seca12g01192	535	MobiDBLite	consensus disorder prediction	1	30	-	-
	Seca12g01192	535	SUPERFAMILY	ARM repeat	87	489	IPR016024	-
	Seca12g01192	535	Pfam	Protein phosphatase 2A regulatory B subunit (B56 family)	393	508	IPR002554	GO:0000159\|GO:0007165\|GO:0019888
	Seca12g01192	535	Pfam	Protein phosphatase 2A regulatory B subunit (B56 family)	77	388	IPR002554	GO:0000159\|GO:0007165\|GO:0019888

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g01192	Seca-Chr12	11681055	11685618	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g01192	K11584		-	gmx:100814349	890.567

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca12g01192	12	11681055	11685618	Seca12g01192	12	11681055	11685618	ECH