Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01174 ATGTCGGGAAAGGGAGCCAAAGGGTTGATAACCTCCGCCAACAAGGACAAGGACAAGGACAAGAAGAAACCTATTTCACGTTCTTCTCGTGCCGGTCTTCAGTTCCCAGTTGGTAGGATCCACCGGCTGTTGAAGTCAAGAACCACATCTAATGGAAGAGTGGGAGCCACGGCTGCTGTCTACTCTGCTGCTATCTTGGAGTATCTGACTGCTGAAGTATTGGAGTTGGCTGGAAATGCTAGCAAGGATCTCAAGGTTAAACGTATTACTCCCAGGCATTTACAACTCGCAATTCGGGGTGATGAAGAACTGGATACACTGATCAAAGGAACAATTGCTGGAGGAGGTGTGATTCCTCACATTCACAAATCTCTTATCAACAAGTCTTCCAAGGAGTAG 399 0.4712 MSGKGAKGLITSANKDKDKDKKKPISRSSRAGLQFPVGRIHRLLKSRTTSNGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01174 132 MobiDBLite consensus disorder prediction 1 31 - -
Seca12g01174 132 SUPERFAMILY Histone-fold 12 109 IPR009072 GO:0046982
Seca12g01174 132 MobiDBLite consensus disorder prediction 11 27 - -
Seca12g01174 132 Pfam C-terminus of histone H2A 102 131 IPR032454 -
Seca12g01174 132 Pfam Core histone H2A/H2B/H3/H4 14 100 IPR007125 GO:0003677
Seca12g01174 132 PANTHER HISTONE H2A 17 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca12g01174 132 CDD H2A 24 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca12g01174 132 ProSitePatterns Histone H2A signature. 31 37 IPR032458 -
Seca12g01174 132 Gene3D Histone, subunit A 11 132 IPR009072 GO:0046982
Seca12g01174 132 FunFam Histone H2A 11 132 - -
Seca12g01174 132 PRINTS Histone H2A signature 82 96 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca12g01174 132 PRINTS Histone H2A signature 109 127 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca12g01174 132 PRINTS Histone H2A signature 23 45 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca12g01174 132 PRINTS Histone H2A signature 68 81 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca12g01174 132 PRINTS Histone H2A signature 53 68 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca12g01174 132 SMART h2a4 12 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01174 Seca-Chr12 11431633 11433841 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01174 K11251 - gmx:100500133 233.802