Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01157 ATGGGAGTGGAGGACGCCTCTAACTCCAATTCCTCTTCACAATGCGATGGCGATGACAATAACAACAAAAACAACACCCTTGTGGTCTTGAATGTCTACGATCTCACCCCTATCAATAATTACATGTATTGGTTTGGATTTGGGATCTTTCACTCCGGCATTGAAGTGCATGGTAAGGAGTATGGATTTGGGGCCCATGACTTCCCAGCTAGTGGAGTTTTTGAAGTGGAGCCAAGGAAGTGCCCTGGATTCATATATAGATGTTCCATCACTTTGGGCCAAATAAATATGAACCCTTCAGAGTTCCGCACATTTATTGAAAACATGGCTGGCGAGTATTATGGGGATACCTATCAGCTCTTATCTAAGAACTGCAATCATTTTACAGATGATGTTTCATATAGATTGACTGGAAAACGAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGGTACCTTGTGCAGCTGTCTACTTCCTGAAAGTTTTCAAGTAACAGGTGTTAAACAGCTACCCGAATACCATGAATGCTCGGAAGATGAATTTGTTGAATCTCTGTCAACTGCCACACCCCATGGGTCAACAGAAATAGATGATGAACAAGAAAAGCACCTTCTGTCACCATCAGCTGGAGCTGAGGATGTTACTTTTGTCAAAGAGTCCCGAGTAAAGTGA 675 0.4311 MGVEDASNSNSSSQCDGDDNNNKNNTLVVLNVYDLTPINNYMYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRKCPGFIYRCSITLGQINMNPSEFRTFIENMAGEYYGDTYQLLSKNCNHFTDDVSYRLTGKRIPGWVNRLAKLGTLCSCLLPESFQVTGVKQLPEYHECSEDEFVESLSTATPHGSTEIDDEQEKHLLSPSAGAEDVTFVKESRVK. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01157 224 Gene3D PPPDE domains 21 170 IPR042266 -
Seca12g01157 224 ProSiteProfiles PPPDE domain profile. 26 163 IPR008580 GO:0008233
Seca12g01157 224 PANTHER DESUMOYLATING ISOPEPTIDASE 24 193 IPR008580 GO:0008233
Seca12g01157 224 SMART DUF862_2a 26 164 IPR008580 GO:0008233
Seca12g01157 224 MobiDBLite consensus disorder prediction 1 20 - -
Seca12g01157 224 Pfam PPPDE putative peptidase domain 28 161 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01157 Seca-Chr12 11193341 11197125 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01157 - K22763 gmx:100778961 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01157 12 11193341 11197125 Seca12g01157 12 11193341 11197125 ECH
Seca12g01157 12 11193341 11197125 Seca12g01157 12 11193341 11197125 PCT