Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01148 ATGAGCTGGTCAGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAATTTCAAGAAGAGAGAAGCATGCCAAAGTTGTGGGTACCCCAAATATGGAGGCCCTGACCCATCAACTTATAGATACAACAGGACTGAAACGTTGGCAGGGGACTGGTTCTGCACTACTATGAACTGTGGAGCTCACAACTATGCTAGCAGATCAAGCTGCTATAGATGTGGTGCATTGAAAGATGATTATTCTTCTGGATATGGGGGGAACATGGCTGGATCTGATTGCAGTTTCCCCCCAGGATGGAAGACTGGAGACTGGATTTGCCCTAGGATATGGCTGTGGAGTGCATAA 345 0.4754 MSWSGGDWMCGACQHINFKKREACQSCGYPKYGGPDPSTYRYNRTETLAGDWFCTTMNCGAHNYASRSSCYRCGALKDDYSSGYGGNMAGSDCSFPPGWKTGDWICPRIWLWSA. 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01148 114 Gene3D - 1 35 - -
Seca12g01148 114 Gene3D - 42 79 - -
Seca12g01148 114 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Seca12g01148 114 Pfam Zn-finger in Ran binding protein and others 6 32 IPR001876 -
Seca12g01148 114 Pfam Zn-finger in Ran binding protein and others 49 77 IPR001876 -
Seca12g01148 114 PANTHER ZINC FINGER PROTEIN 43 108 - -
Seca12g01148 114 SUPERFAMILY Ran binding protein zinc finger-like 2 34 IPR036443 -
Seca12g01148 114 SUPERFAMILY Ran binding protein zinc finger-like 45 79 IPR036443 -
Seca12g01148 114 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Seca12g01148 114 SMART zf_4 50 76 IPR001876 -
Seca12g01148 114 SMART zf_4 6 30 IPR001876 -
Seca12g01148 114 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Seca12g01148 114 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01148 Seca-Chr12 11099463 11102283 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01148 - - gmx:100792208 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02976 12 57159361 57162136 Seca12g01148 12 11099463 11102283 PCT