Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00455 ATGACAAACTTGAAGCCCTTAACTGTTTGTTTCTGTCTTCAAGCTGTTCTTGTTATGATTTCAATTCCAGCAATCCACTGCAGAACTTTCCTGTCCAATGATGAAACACTGATTGTGAACACCTGCAAGAAAACACCAAATTACAATGTTTGCTTTCAATCTCTCAAAGGAAGCACTGGTGCAGATGTCACAGGACTGGCTCAAACCATGGTGAGAGTGATGAAAGCAAGAGCAAATGATGCCTTAAATAAAATCCATGAGCTGCAAAGAGTTGGAGCTGGAGGACCTAAGCAAAAGAGAGCCTTGAGTTCTTGTGCTAGCAAATATAATGCAATTTTGATAGCTGATATTCCTCAGGCCACTGAAGCTTTGCAGAAAGGGGACCCTAAATTTGCAGAAGATGGTGCAAATGATGCTGCTAATGAAGCTACCTATTGTGAGAGTGAGTTCTCTGGAAAATCACCACTCACCAAACAGAACAATGCTATGCATGACGTTGCAGCTGTTACAGCATCTATTGTTAGACTATTGCTCTAA 537 0.4115 MTNLKPLTVCFCLQAVLVMISIPAIHCRTFLSNDETLIVNTCKKTPNYNVCFQSLKGSTGADVTGLAQTMVRVMKARANDALNKIHELQRVGAGGPKQKRALSSCASKYNAILIADIPQATEALQKGDPKFAEDGANDAANEATYCESEFSGKSPLTKQNNAMHDVAAVTASIVRLLL. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00455 178 Coils Coil 71 91 - -
Seca12g00455 178 PANTHER PECTINESTERASE INHIBITOR-LIKE 18 177 - -
Seca12g00455 178 SMART PMEI_2 33 173 IPR006501 GO:0004857
Seca12g00455 178 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 177 IPR035513 -
Seca12g00455 178 CDD CIF_like 37 177 IPR034087 GO:0004857|GO:0043086
Seca12g00455 178 NCBIfam pectinesterase inhibitor domain 11 177 IPR006501 GO:0004857
Seca12g00455 178 Pfam Plant invertase/pectin methylesterase inhibitor 37 171 IPR006501 GO:0004857
Seca12g00455 178 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 178 IPR035513 -
Seca12g00455 178 FunFam Invertase/pectin methylesterase inhibitor family protein 33 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00455 Seca-Chr12 3958851 3959387 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00455 - - gmx:100500640 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00455 12 3958851 3959387 Seca12g00455 12 3958851 3959387 ECH