Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00454 ATGCCAGTAACTCAGTGCAGGATTATCCAGCTAAATGATGCCAATTTGATAGAAGAAACTTGCAAGCAGACACCCCATCATGATCTTTGCATTCAGTACCTCAAAGCTGATCCTAGGAGCACTGGTGCAGATGTCTCAGGGCTAGCACTAATCATGGTAGATGTAATCAAAGCCAAAGCAAACAATGCCTTAGACAAAATCCATCAACTGCTTCAGGGGAGTCCAAAACCTGGTCAAAAGGAACCATTGAGTTCATGTGCTGACCGATACAAAGCAATTGTGGAAGCTGATGTGCCAAAAGCTATTGCAGCTTTGAAGAAAGGGGACCCCAAGTTTGCTGAAGATGGTGCAAATGATGCTGCCCTTGAAGCCACCACTTGTGAGAGCAGCTTCTCAGGGAAATCACCACTCACAAATGACAACAATGCTATGCATGATGTAGCAGACAAGGATGGGGATGGAGATTTGGTGGACCAGATATGCAAAAAGACACCCTTTTATGACCTATGCAGCTCCATCCTACATTCAGACCCTCAAAGTCCCAACACTGATCCCAAGGGTATGGCCCTCATAATGGTCAATGACATTCTGGCAAATGCTACTGACACACTGAGTTACATTGAAGTACTGATCAAACAAACCTCAGACCAACAATTGGAGCAACAATTGGCCTTTTGTGCAGAGTCATACATCCCAGTTGTTAAATACATTCTGCCACAAGCAGCTGATGCCATAAACCAAGGTAGATATGGGTTTGCCAGTTATTGCATATTTGATGCTGAGAAGGAAGTGGATGCTTGTAACAAGAAATTCTCTGGCTCAACTCAGTCACCTTTAGGTGATAGAAATAGCATTATGCAGAAGTTGGTGGATGTGGCTGCAGCCATAGTAAAACTATTAGTAAATGGCTGA 912 0.4375 MPVTQCRIIQLNDANLIEETCKQTPHHDLCIQYLKADPRSTGADVSGLALIMVDVIKAKANNALDKIHQLLQGSPKPGQKEPLSSCADRYKAIVEADVPKAIAALKKGDPKFAEDGANDAALEATTCESSFSGKSPLTNDNNAMHDVADKDGDGDLVDQICKKTPFYDLCSSILHSDPQSPNTDPKGMALIMVNDILANATDTLSYIEVLIKQTSDQQLEQQLAFCAESYIPVVKYILPQAADAINQGRYGFASYCIFDAEKEVDACNKKFSGSTQSPLGDRNSIMQKLVDVAAAIVKLLVNG. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00454 303 PANTHER PECTINESTERASE INHIBITOR-LIKE 12 149 - -
Seca12g00454 303 CDD CIF_like 155 300 IPR034087 GO:0004857|GO:0043086
Seca12g00454 303 FunFam Invertase/pectin methylesterase inhibitor family protein 152 301 - -
Seca12g00454 303 Gene3D Invertase/pectin methylesterase inhibitor family protein 153 301 IPR035513 -
Seca12g00454 303 Gene3D Invertase/pectin methylesterase inhibitor family protein 12 150 IPR035513 -
Seca12g00454 303 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 154 300 IPR035513 -
Seca12g00454 303 SMART PMEI_2 12 144 IPR006501 GO:0004857
Seca12g00454 303 SMART PMEI_2 152 296 IPR006501 GO:0004857
Seca12g00454 303 NCBIfam pectinesterase inhibitor domain 155 300 IPR006501 GO:0004857
Seca12g00454 303 NCBIfam pectinesterase inhibitor domain 6 149 IPR006501 GO:0004857
Seca12g00454 303 Pfam Plant invertase/pectin methylesterase inhibitor 15 147 IPR006501 GO:0004857
Seca12g00454 303 Pfam Plant invertase/pectin methylesterase inhibitor 155 296 IPR006501 GO:0004857
Seca12g00454 303 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 14 147 IPR035513 -
Seca12g00454 303 CDD CIF_like 14 149 IPR034087 GO:0004857|GO:0043086
Seca12g00454 303 FunFam Invertase/pectin methylesterase inhibitor family protein 12 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00454 Seca-Chr12 3953170 3956131 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00454 - - gmx:100820305 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00454 12 3953170 3956131 Seca12g00454 12 3953170 3956131 ECH