Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00434 ATGTGCCCTTCTGGCCGTAGCCTCCGCCCTCATTCCTCAACCTCCTCTTCCACCACCGCCACGTCAGGTTTCCGACCTGCATTCGACATTCTAGACGCTGATTCCGACGGAAAAATTAGCCGCGATGACCTCCGCGCCTTCTACGCCGGCATGTACGGCGGCGTCTCCGGAAGAGACGACGTCATCGGTGCGATGATGACGGTGGCGGACACCAACAAGGACGGGTTCGTGGAGTACGAGGAATTCGAGCGCGTGGTTGCAGGGAACGCAGAGAAGAGAGCGGTAGGGTGTGGGGCGATGGAAGATGTGTTCAGGGTGATGGACAAGGACGGTGACGGCAAACTTAGCCACGAGGACTTGAAGAGTTACATGGCTTGGGCTGGGTTCAAAGCCACCGACGAAGACATCAACGCCATGATTAAGTTCGGCGGCGGCGATCAAAACGGCGGCGTCACCTTCGATGGTTTGCTTCGTATATTAGCTCTTGATTGTGCCGTCGCTAATTAA 507 0.5661 MCPSGRSLRPHSSTSSSTTATSGFRPAFDILDADSDGKISRDDLRAFYAGMYGGVSGRDDVIGAMMTVADTNKDGFVEYEEFERVVAGNAEKRAVGCGAMEDVFRVMDKDGDGKLSHEDLKSYMAWAGFKATDEDINAMIKFGGGDQNGGVTFDGLLRILALDCAVAN. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00434 168 ProSitePatterns EF-hand calcium-binding domain. 32 44 IPR018247 -
Seca12g00434 168 CDD EFh 101 161 IPR002048 GO:0005509
Seca12g00434 168 MobiDBLite consensus disorder prediction 1 20 - -
Seca12g00434 168 Pfam EF hand 101 124 IPR002048 GO:0005509
Seca12g00434 168 ProSiteProfiles EF-hand calcium-binding domain profile. 27 54 IPR002048 GO:0005509
Seca12g00434 168 SUPERFAMILY EF-hand 23 160 IPR011992 -
Seca12g00434 168 FunFam Calcium-binding protein CP1 17 86 - -
Seca12g00434 168 Pfam EF-hand domain pair 25 85 IPR002048 GO:0005509
Seca12g00434 168 ProSitePatterns EF-hand calcium-binding domain. 70 82 IPR018247 -
Seca12g00434 168 CDD EFh 24 87 IPR002048 GO:0005509
Seca12g00434 168 Gene3D - 6 165 - -
Seca12g00434 168 ProSiteProfiles EF-hand calcium-binding domain profile. 57 92 IPR002048 GO:0005509
Seca12g00434 168 ProSiteProfiles EF-hand calcium-binding domain profile. 100 130 IPR002048 GO:0005509
Seca12g00434 168 PANTHER CALCIUM BINDING PROTEIN 100 157 - -
Seca12g00434 168 SMART efh_1 99 127 IPR002048 GO:0005509
Seca12g00434 168 SMART efh_1 135 163 IPR002048 GO:0005509
Seca12g00434 168 SMART efh_1 23 51 IPR002048 GO:0005509
Seca12g00434 168 SMART efh_1 61 89 IPR002048 GO:0005509
Seca12g00434 168 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00434 Seca-Chr12 3755672 3756178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00434 1 160 EF-hand Containing Proteins AT5G49480 55.828 6.55e-57 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00434 K02183 - gmx:100799972 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00434 12 3755672 3756178 Seca12g00434 12 3755672 3756178 ECH