Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00430 ATGGAAAAGAGGGATTTCAAGCAATTTGATGTGGTCTCAGATACCTCAGATCACTACTTTGTTCGTAAAAACCCACGTGTTGGAGATTGTTTCAGCAATTCAAAAAGAGATGCATACAAAACCATCATGAGAGAGTGGAAAACTCTAGAAGAACATTTACCTGAATCCATCTATGTTCGTGTTTACGATCGTAACATTGACCTAATGAGGGCTGTGATTATAGGAGCTGCCGGCACACCTTACCACGATGCTCTGTTCTTCTTTGACATTGCATTCCCTCACGATTACCCTACACACCCACCCAAGGTTTATTATCATTCATTTGGTGTGAGACTCAACCCCAATCTCTACAACAACGGTACCATTTGCTTGAGTCTTCTCAACACCTGGTTTGGGAATGACAATGAGAGGTGGGATCCAACTAGTTCGACGGTGTTACAAGTCTTGCTTTCCATCCAAGGACTCGTTCTCAATGAGAGGCCATTCTATAACGAACCGAGTAACGGCACGTTGCGCCGTTTCCTTCCTGAGAATAAGTCAAACGCCTACAATGAGGAAGTGTTCAGTCTCACGTGCAGCACCACCGTGCACCTCATTCGCAAACCCCCTAAGCACTTCGAAGACTTTGTGAGAGACCACTTTCGCGAGCGAGCACATGATATTCTCTCCGCGTGCGACGAGTACGTGAATGGGCGCGTGAGAGTTGGGTATTACAATTGCAACATTAGTAGCATGAGGAGGTTGGGTTCCTCTTCGAGGGTGAAAGTGACACCTGATTTCGAGAAGTGGGCGACAGATTCTTACCCCAAACTGATTGACACTTTGCAACGGTTTTGCGGTGCTAATGTGGAAACTCCCATCATCAAAACCGTCGAGTTGCCAAAGAAGCCATCTGAAAGAAAAAAGGACAATGGAATCTTCAAGAAAGCCATGGCGAAGATTAAACAGACTTTTAAATGGAAGAATTTTGGGAAAAAGAAGAAGATTATTAGCGGGACTGAAGAAAGTGATGATTTAAGATTATAA 1026 0.4425 MEKRDFKQFDVVSDTSDHYFVRKNPRVGDCFSNSKRDAYKTIMREWKTLEEHLPESIYVRVYDRNIDLMRAVIIGAAGTPYHDALFFFDIAFPHDYPTHPPKVYYHSFGVRLNPNLYNNGTICLSLLNTWFGNDNERWDPTSSTVLQVLLSIQGLVLNERPFYNEPSNGTLRRFLPENKSNAYNEEVFSLTCSTTVHLIRKPPKHFEDFVRDHFRERAHDILSACDEYVNGRVRVGYYNCNISSMRRLGSSSRVKVTPDFEKWATDSYPKLIDTLQRFCGANVETPIIKTVELPKKPSERKKDNGIFKKAMAKIKQTFKWKNFGKKKKIISGTEESDDLRL. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00430 341 CDD UBCc 39 191 IPR000608 -
Seca12g00430 341 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 5 261 - -
Seca12g00430 341 SMART ubc_7 40 196 - -
Seca12g00430 341 Gene3D Ubiquitin Conjugating Enzyme 1 258 IPR016135 -
Seca12g00430 341 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 37 196 IPR000608 -
Seca12g00430 341 Pfam Ubiquitin-conjugating enzyme 42 187 IPR000608 -
Seca12g00430 341 FunFam Putative ubiquitin-conjugating enzyme E2 38 1 278 - -
Seca12g00430 341 SUPERFAMILY UBC-like 35 205 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00430 Seca-Chr12 3726484 3727509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00430 6 278 Miscellaneous Gene Families AT2G33770 46.350 6.77e-73 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00430 K10581 - gmx:100791343 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00430 12 3726484 3727509 Seca12g00430 12 3726484 3727509 ECH