Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00421 ATGGAAGGTTTAGCCGATGATGATTTTGGAGAACTTTACGCCGACCTTGAAGTTCTGGCCACTCCAGCTCCTGCAGAACAAGATGAACTAGAACCAGAACAAGAAGATAGTGGTGTAAAGAACGAGGATGCCAGTGATGATTATATCGCCATCGGAACGGACAGCGACGATGACTTAAATATAGTGTTGAACGACGAGGATGGACGGAGTTTCTCCGTTGGTTGTAACAAGGATGTTCGTGGTGATGGTTTTGTGGTTGACACTGAAGGAAGAAATTGGGGCAAGAATGGAGCGTGCGCTGATCAGTTGAAGGATGGTTCCGAACTAGTTAGTTCCGATGCAAATGGTGGTTTTAGTAAAAATGGGGTGAATGGTGGATACCGTTCACAATTTTATCGTCCTAAGTTTATAAGGACTCAAGGATCGATGTTTGTGAATAATATGAAGGCCAATAAGTCAATGGGGCTGACTTCCGATTGTTCATCCTTCACTAAAGGAAGGGGGAATGTTATCCAGAACCAGATATCAAGCTCCACTCACTTTGATCGCATATGCAATGCAACAAATTCAATGGTTGTTCAATGTGGATCATTTCTTCCTTGGTACTGGAATATATACGATGTAAACATTGATAAATTGGAAGAGAAGCCGTGGAGGTTTCCTGGAGTTGACATAACAGATTACTTCAACTTTGGTTTTGATGAGAACACCTGGAAGCAATACTGTATGTCTCTGGGGCAACTGTGGCAAACATCTGCGCAAATTGGTATCCCCGTTAATGAGCCTGCTAAATTGAATCAGGAATCCACGAGGGAGCAAATTGATCAAGTTGTATCAGGGAATTTACTTTCTCCTTCCACAAAAAGTGAAGTGCCAAAGGGCAGAGCAATACAGGTCGAGGACAGTGTGGTTGAGCGCCAACCATCCATACATGTGAGGCGTCCACGCAGTATAGATTCTGATGTTATTATACAGATCAAGGTGCACGAGTCGTCTGACAATAATTCTGGTTCTGTCAATAGCAATGTATGTGATTCATTGGAAGAAGGGGAATTTATCACAGGCAATAACAGAAACAATGACAATTCTTCCAGTGAGCATGATGTTCTCTCTGAAGAGCAATTGGAAGATGTAAAAAAATCAAAAGAGTTATCTGTTCAGGAAAGAAATGACCTGATTCCTGGTATGGTTAAAGCTCAGCATCCAGATGAAGTGGACCAACATTCAGAAGATGCTGCAGAAGTGCTGGAGGAAGAAATGATAAAAACTGAGGAGAGAGTTGGCGAAGACACATGTAGTGCAGATCCATGCTGGATTGAACCAGAGTTATCACTTGGTGATCAAGATCTGAGCCTGACTTCCTATACTGACAATGATTCTGAGGGAACTGAAGATAGTGTACATGTTGATAATGAGAACAATCATAGCCCTGTAAGAAGCCATTCGATGAATTCTGACACCGACTTAAAGGAGTCTTTGTCACTTTATCATAAAACCTCAAAGAACATCAGTTTCAATAGAACACCGGCAAAGATAGCTTATTATTCAAGAAATAGAGGTCCCGTACAACAGGAACGGAGGCATCAAAGTGGTAGACATGTACCTGATTCTAAACTGAAAAAGCACAGTGAAAATGACGATGTATCTCACATCCCCAAGTCCAGGGGAAGGGATCTGCCTCGCTGGGGTCATCAATTTAACTGCAGACCAAAAGAACAACTGCAATATTTTGGCAGTCATAAAAGAAAAGATATTTCATATAATAAGGAAAGAAAACAATCCTGCTATTATGATGCTGAAAAGGTTGTTGATGACCTGGTTCAAACATACAGTGGATATTCAGATAGGGAAGATCGAAACAGCCTCAGGAAGAATGCAAATAAATATTTCAGAAGAAATAGGGATAAGAGGGAGTGTTTTTTTGAGCAAAGAACTCTAATGGAATATAATGAAGACAGTGATTGGCATCCTGCTTATAGAGAACACTATGTTGATGATGACCTGAATCTCCTCTCTTATAGGGAGCCAAAGAAGTTCCTTCCAAAACATTCCTCTGTTCCTGCAAAGGAGAGGAGTACTCAAAGGAGAAGAATGCATCACAAGCCCCATTTTAGGGACAGAGAGTATGATAATAATCAATGGTTTGATGAACATGAGTCTGAGTTCTTAAACACAAGTTATAGAATGCCCTCTTCTTTTGCTGAGAGAGAATTAGAATATTTGAATAATAAACATGAAGAGCAGTTTCCACAAATTGATAGAGCTCTGGAAAGATATGCCAAAAGGGGTAGACATCGTGGTGGGGCACCCTTAGTCATGGATACCTTGTGGTCTAGGAAAAGGGAAGATGAATGCTCGGAGTACATACATCATCAGACTTCATATTTGAAGTATCCGAGACAATCTCATACTGATTCAGCGAGAAATTATGTGTACGGAACAAGAATAAATGAAAATTTCAGGGGATGTGAGAGACATAAACATGCCACCAACAGAGGCAATGACTGGCGCTGTGTTTATACTGATGCTGCTGAAGATGAAGATTGTGTAGTTTGTCCCGTAAAAGAGCGTGAGTTTTACACTCCCCCATCTGATTTTCTGCACTGGACCAAGGACGATAATACTTTTTGGCATCATGATGAATTGCATCCTGAAGAGGATGCATTTTTCTATGAGGAAACTCCAAGGCATGTAACACATGCGAGGTGTGGATCTTTGCATGCTAAGGTGCAAAGTGATGATTTAAAATTACAGCAGCATCAGCTAAATTTGCCAAGGAGAGATAGCGACAGCTTTCTAAAACGAAGCTCTAATGTTATGAGTAGAGATCACTGTCGGCAGGCAGTGCTGAGATGCAGGAAATCAGTTGACTTGATTAATAGGGAAGGAAAGTCTCATGCAAAAAGTTCCAGAGTGGTGTGCAATGATAGGCTTGAAAATAGGGATCGAGGGATTGCTAAGAAGGAGACAGTCTTGGCGGGTTTTGATGATTCTCAAAAGAAGGCTATCAAATTTGACATCTCAAAATCTCTGTGCAACAATGAGAATAAGAAATCGCTTCAGAACCTTCCAGATAAAGGGCAGAAAGAAAGTTTGGATATTGAGGAAGGTGAGATAGTAACAGAAGAACCATACATGGAGGCTTTTGTATCCAGAAGAGATGTTTCTAAGGGTGCAGCAGTCACTGACAGTGTGAAGAAGAGGATGTCACAAAATGGAAATAATTCTGGACCGCATGTAGGTAAATTAGACAGCCAGAAGATTCTTGATACATTAGCTAAGATGGAGAAACGTAGGGAGCGCTTTAAGCAGCCCATCAGTATGATAAAAGAGGCAGAAAAGAGTTTGAAGCTCAAAACTGACTCAGTTGTTGATATAGCCATAGGTGATATAAAGCAACATAGGCCAGCTCGGAAGAGGCGCTGGAACGGTGAAGTTCCACCAAAAGACGCAAACTATGAGGGAACGCTTGTGGTTCGCCGGCCGGTGAAGGAGTTTTCCGGCGAAGAGGAGGAACAAGGGAATGAGAAAGAAGAAGATGACGCAGAGGCTTCTGGAATCGATGCCGGGCTCACAAAATTTGCGAAGAAGATGCCGATGTTTGAACCAGAGAGGGTTGAATCAGATTCCAAAGAGAAGCCCCTTACTGTGAATTTGGACTTGGCGTTATATAGGGCGAAGGTTTTGGCCAGGAACTTTCGGTATGAAGAAGCTGAGGCAATACTTAAGAAGTGTATATACTATTGGCCGCAAGATGGTCGAGCTTATGTGGCACTTGGGAAGAATTTCAGTAAGCAATCCAAAACAGCTCAAGCCAGAGAGATATACGAGAAGGGTTGCCAGGCTACTGAGGGTGAAAATGCCTACATTTGGCAGTGCTGGGCTGTTCTTGAGAAGAAAATGGGAAATATCAGGAGAGCAAGAGAGCTTTTTGATGCTGCCACGGTTGCTGATAAGAAGCATGTTGCTGCTTGGCATGGATGGGCAGTTCTAGAGTTAAACCAGGGAAATATAAAGAAAGCAAGGAATCTGCTTGCCAAAGGTCTTAAATATTGTGGACAGAATGAGTACATATACCAAACACTTGCATTGCTTGAAGCTAGAGCAAATAGATATCAGCAGGCTCGCTATTTATTCAATCAGGCCACTAAGTGTAATCCTAATAGCTGTGCTAGTTGGCTTGCTTGGGCTCAAATGGAGGTGGAACAGGAAAATTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTACAGGCAAGTCCTAAAAATAGGTTTACTTGGCATGTATGGGCCATTTTTGAAGCTAATGTGGGAAACCTTGACAAGGGAAGAAAACTTCTGAAGATAGGACATGCTCTAAATCCAAGGGATGCTGTTCTCCTTCAGTCTCTTGCATTATTAGAATACAAACATTCAACTGCAAACCTTGCTCGGGTTTTGTTCAGAAGAGCAGCTGAAATAGATCCTAGGCATCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGAAACTTGAATACAGCTAGGGAATTATACCAGAAAGCTGTATCGATTGATTCAAACAGTGAAAGTGCTGCCAGGTGTCTCCAGGCTTGGGGTGTTCTGGAGCAGAGGGCTGGCAATCTTACAGCTGCCCGTAGATTATTTAGATCCTCATTGAATGTAAATTCTCAGAGTTATGTGACATGGATGACTTGGGCATCGCTGGAGGAAGATCAAGGAAATCCTGTGCGTGCTGAAGAGATTCGAAACCTTTATTTCCAGCAGCGCACGGAAGTTGTAGATGATGCTTCATGGGTTATGGATATTTTAGACCCTGCCATTGACAGTTTGAAGAGACTCCTCAAGCTGGACCCAAATTCGTACAACATGCTCCCGGATTCTTTGAGAAATATTACCGAGACAAATAAAAACAGGGTTGATTTTTCTGATGATAATGATGTGGACGGTGAAAGTGACTTTGATTTGGATGCTTTCATTATGGAAAGATTATCCTTAAATCCGTCCAAACTGCAAGTTCAGTTGGGAACACCAAAAACTTCTTCTGTGAAAAAAACTATGTCTCCAAGAAGGATATGGCGATCAAATAGTAGAATTGCCAAAGTATAA 5118 0.4191 MEGLADDDFGELYADLEVLATPAPAEQDELEPEQEDSGVKNEDASDDYIAIGTDSDDDLNIVLNDEDGRSFSVGCNKDVRGDGFVVDTEGRNWGKNGACADQLKDGSELVSSDANGGFSKNGVNGGYRSQFYRPKFIRTQGSMFVNNMKANKSMGLTSDCSSFTKGRGNVIQNQISSSTHFDRICNATNSMVVQCGSFLPWYWNIYDVNIDKLEEKPWRFPGVDITDYFNFGFDENTWKQYCMSLGQLWQTSAQIGIPVNEPAKLNQESTREQIDQVVSGNLLSPSTKSEVPKGRAIQVEDSVVERQPSIHVRRPRSIDSDVIIQIKVHESSDNNSGSVNSNVCDSLEEGEFITGNNRNNDNSSSEHDVLSEEQLEDVKKSKELSVQERNDLIPGMVKAQHPDEVDQHSEDAAEVLEEEMIKTEERVGEDTCSADPCWIEPELSLGDQDLSLTSYTDNDSEGTEDSVHVDNENNHSPVRSHSMNSDTDLKESLSLYHKTSKNISFNRTPAKIAYYSRNRGPVQQERRHQSGRHVPDSKLKKHSENDDVSHIPKSRGRDLPRWGHQFNCRPKEQLQYFGSHKRKDISYNKERKQSCYYDAEKVVDDLVQTYSGYSDREDRNSLRKNANKYFRRNRDKRECFFEQRTLMEYNEDSDWHPAYREHYVDDDLNLLSYREPKKFLPKHSSVPAKERSTQRRRMHHKPHFRDREYDNNQWFDEHESEFLNTSYRMPSSFAERELEYLNNKHEEQFPQIDRALERYAKRGRHRGGAPLVMDTLWSRKREDECSEYIHHQTSYLKYPRQSHTDSARNYVYGTRINENFRGCERHKHATNRGNDWRCVYTDAAEDEDCVVCPVKEREFYTPPSDFLHWTKDDNTFWHHDELHPEEDAFFYEETPRHVTHARCGSLHAKVQSDDLKLQQHQLNLPRRDSDSFLKRSSNVMSRDHCRQAVLRCRKSVDLINREGKSHAKSSRVVCNDRLENRDRGIAKKETVLAGFDDSQKKAIKFDISKSLCNNENKKSLQNLPDKGQKESLDIEEGEIVTEEPYMEAFVSRRDVSKGAAVTDSVKKRMSQNGNNSGPHVGKLDSQKILDTLAKMEKRRERFKQPISMIKEAEKSLKLKTDSVVDIAIGDIKQHRPARKRRWNGEVPPKDANYEGTLVVRRPVKEFSGEEEEQGNEKEEDDAEASGIDAGLTKFAKKMPMFEPERVESDSKEKPLTVNLDLALYRAKVLARNFRYEEAEAILKKCIYYWPQDGRAYVALGKNFSKQSKTAQAREIYEKGCQATEGENAYIWQCWAVLEKKMGNIRRARELFDAATVADKKHVAAWHGWAVLELNQGNIKKARNLLAKGLKYCGQNEYIYQTLALLEARANRYQQARYLFNQATKCNPNSCASWLAWAQMEVEQENYRAARKLFEKAVQASPKNRFTWHVWAIFEANVGNLDKGRKLLKIGHALNPRDAVLLQSLALLEYKHSTANLARVLFRRAAEIDPRHQPVWFAWGWMEWKEGNLNTARELYQKAVSIDSNSESAARCLQAWGVLEQRAGNLTAARRLFRSSLNVNSQSYVTWMTWASLEEDQGNPVRAEEIRNLYFQQRTEVVDDASWVMDILDPAIDSLKRLLKLDPNSYNMLPDSLRNITETNKNRVDFSDDNDVDGESDFDLDAFIMERLSLNPSKLQVQLGTPKTSSVKKTMSPRRIWRSNSRIAKV. 1706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00421 1705 Pfam Tetratricopeptide repeat 1362 1423 - -
Seca12g00421 1705 Pfam Fip1 motif 207 245 IPR007854 -
Seca12g00421 1705 MobiDBLite consensus disorder prediction 22 44 - -
Seca12g00421 1705 SUPERFAMILY HCP-like 1402 1623 - -
Seca12g00421 1705 SMART hat_new_1 1438 1470 IPR003107 GO:0006396
Seca12g00421 1705 SMART hat_new_1 1404 1436 IPR003107 GO:0006396
Seca12g00421 1705 SMART hat_new_1 1472 1504 IPR003107 GO:0006396
Seca12g00421 1705 SMART hat_new_1 1336 1368 IPR003107 GO:0006396
Seca12g00421 1705 SMART hat_new_1 1370 1402 IPR003107 GO:0006396
Seca12g00421 1705 SMART hat_new_1 1302 1334 IPR003107 GO:0006396
Seca12g00421 1705 SMART hat_new_1 1543 1575 IPR003107 GO:0006396
Seca12g00421 1705 SMART hat_new_1 1267 1300 IPR003107 GO:0006396
Seca12g00421 1705 SMART hat_new_1 1506 1541 IPR003107 GO:0006396
Seca12g00421 1705 MobiDBLite consensus disorder prediction 1165 1185 - -
Seca12g00421 1705 MobiDBLite consensus disorder prediction 365 382 - -
Seca12g00421 1705 ProSiteProfiles TPR repeat profile. 1390 1423 IPR019734 GO:0005515
Seca12g00421 1705 FunFam High chlorophyll fluorescent 107 1210 1419 - -
Seca12g00421 1705 MobiDBLite consensus disorder prediction 521 563 - -
Seca12g00421 1705 SMART tpr_5 1492 1525 IPR019734 GO:0005515
Seca12g00421 1705 SMART tpr_5 1458 1491 IPR019734 GO:0005515
Seca12g00421 1705 SMART tpr_5 1529 1562 IPR019734 GO:0005515
Seca12g00421 1705 SMART tpr_5 1322 1355 IPR019734 GO:0005515
Seca12g00421 1705 SMART tpr_5 1288 1321 IPR019734 GO:0005515
Seca12g00421 1705 SMART tpr_5 1253 1286 IPR019734 GO:0005515
Seca12g00421 1705 SMART tpr_5 1356 1389 IPR019734 GO:0005515
Seca12g00421 1705 SMART tpr_5 1219 1252 IPR019734 GO:0005515
Seca12g00421 1705 SMART tpr_5 1390 1423 IPR019734 GO:0005515
Seca12g00421 1705 SUPERFAMILY TPR-like 1234 1468 IPR011990 GO:0005515
Seca12g00421 1705 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 1149 1700 IPR044624 GO:0003729|GO:0006397
Seca12g00421 1705 MobiDBLite consensus disorder prediction 681 701 - -
Seca12g00421 1705 ProSiteProfiles TPR repeat profile. 1492 1525 IPR019734 GO:0005515
Seca12g00421 1705 MobiDBLite consensus disorder prediction 516 563 - -
Seca12g00421 1705 MobiDBLite consensus disorder prediction 461 475 - -
Seca12g00421 1705 ProSiteProfiles TPR repeat profile. 1356 1389 IPR019734 GO:0005515
Seca12g00421 1705 MobiDBLite consensus disorder prediction 352 382 - -
Seca12g00421 1705 Gene3D Tetratricopeptide repeat domain 1218 1463 IPR011990 GO:0005515
Seca12g00421 1705 Gene3D Tetratricopeptide repeat domain 1464 1628 IPR011990 GO:0005515
Seca12g00421 1705 MobiDBLite consensus disorder prediction 449 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00421 Seca-Chr12 3640631 3657851 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00421 - - tpra:123923436 1385.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00421 12 3640631 3657851 Seca12g00421 12 3640631 3657851 ECH