Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00407 ATGAGTTCCATGAAATTCTGCCGCCGTTGCAATAACATTCTGTACCCTATGGAGGACAAGGAGCACAAGATCCTCCTCTACGCTTGTCACAACTGCGATCACCAGTTATTCGCTGTTGATCAGGAGATTGCAGATAATAACATTGTCTATAGAAGTGAGATACATCATTCTAATAAACGGCGCACTCAGGCGGAAGAAAATGTAGCTGCAGATCCAACTCTACCTCGCACCAAGTCTGTTCGCTGTTCTCAGTGCAATCATGGAGAAGCTGTCTTTTTCCAGGCAACGGCTAGTGGAGAACAAGGTATGACACTCATTTTTGTTTGCTGCAACCCAAACTGTGGCAACCGATGGAGAGACTAG 363 0.4573 MSSMKFCRRCNNILYPMEDKEHKILLYACHNCDHQLFAVDQEIADNNIVYRSEIHHSNKRRTQAEENVAADPTLPRTKSVRCSQCNHGEAVFFQATASGEQGMTLIFVCCNPNCGNRWRD. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00407 120 Gene3D - 1 52 - -
Seca12g00407 120 PIRSF RNApol_RpoM 4 120 IPR012164 GO:0003899|GO:0006351
Seca12g00407 120 Pfam RNA polymerases M/15 Kd subunit 4 33 IPR001529 GO:0006351
Seca12g00407 120 SMART Cys4_2 80 120 IPR001222 GO:0003676|GO:0006351|GO:0008270
Seca12g00407 120 SUPERFAMILY Zinc beta-ribbon 1 47 - -
Seca12g00407 120 CDD Zn-ribbon_RPB9 70 119 IPR034012 GO:0006379
Seca12g00407 120 Gene3D - 53 120 - -
Seca12g00407 120 PANTHER DNA-DIRECTED RNA POLYMERASE 1 119 IPR012164 GO:0003899|GO:0006351
Seca12g00407 120 ProSiteProfiles Zinc finger TFIIS-type profile. 78 119 IPR001222 GO:0003676|GO:0006351|GO:0008270
Seca12g00407 120 SMART rpol9cneu 5 64 IPR001529 GO:0006351
Seca12g00407 120 Pfam Transcription factor S-II (TFIIS) 81 119 IPR001222 GO:0003676|GO:0006351|GO:0008270
Seca12g00407 120 FunFam DNA-directed RNA polymerase subunit 53 120 - -
Seca12g00407 120 SUPERFAMILY Zinc beta-ribbon 60 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00407 Seca-Chr12 3559962 3562834 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00407 K03017 - nnu:104605091 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00407 12 3559962 3562834 Seca12g00407 12 3559962 3562834 ECH
Seca12g00407 12 3559962 3562834 Seca6g04070 6 108440119 108443133 PCT