Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00404 ATGACTGCTCTTTACTTAGTCTCTCTTCTAATTGGATTACAGCGTGTCAAGGTGTACCGTCTGAATGATGATGGAAAATGGGATGACCAGGGTACTGGACATGTCACTGTTGATTATTTGGAGCGATCAGAAGAGCTGGGCTTATTTGTTTATGATGAAGAAGACAATGAGACCATACTTTTGCATCGTATTAGTTCTGATGATATTTATAGGAAGCAAGAAGATTCAATTATCTCATGGAGAGATCCAGAATATGCTACAGAACTGGCACTTAGCTTTCAAGAGCCTAGTGGATGCTCTTACATATGGGACCATATTTGCAATGTGCAGAGGAATATGCATTTTAATACTTTAAATAGTGAGCCATTTCAGAGTGTTAACAGTGAGTTAAGGGAGTTGCCTGCGGTTGAGCTATCAACACTTCCTTTGATTCTTAAGACTGTGGTTGACAGTGGCATAGCAGATCAGTTGCGGCTTACGGAACTAATATTAAATGATCAAGATTTTTTTCGGAAGCTGATGAAAGTATTCAGAATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATCAGACTTGTTTGCTCTCTTGCAGTTTTGCTTAATAGTCCACCAATTTTTGAGAGAATTTTTAAAGATGAATATATAGTGGACATTATTGGGGCCCTTGAGTATGATCCGGAACTTCCTTGTGTTCAACATCATCGTAAATTCTTAAATGAGCATGTTGTTTTTAAGGAGGCCATACCTATAAAAGACCCCATTGCGTTGTCAAAGATACATCAGACATATAGAGTTGGTTTTTTGAAGGATGTTGTTTTGGCTAGAGTCTTAGATGAGGCTACAAGTGCAAGTCTTAACTCCATAATACATGGGAACAATGCCTTTGTTATTTCTTTGTTGAAGGACGATAGTAAATTTATCCAGGAGTTGTTTGCTAGGTTAAAATTCCCCACAACCTCTCAAGAAACAAAGAAGAACTTGGTCTATTTCTTGCATGAGTTTTGTAGTGTAAGCAAGAGCTTACAGATGGTCCAGCAGCTTCGGCTTTTTAGGGACCTAATGAATGAAGGCATCTTTGACATTGTCACCAATGTTTTGCAAAATCAAGACAAGAAGCTTGTGCTAACTGGAACAGACATCCTCATTCTTTTCTTGAATCAGGATCCTAATCTTCTGCGATCATATGTTGTTCGGCAGGAAGGAATTACTCTTCTAGGACTTCTGGTTAAAGGAATGATCACAGATTTTGGAGAGCACATGCACTGCCAGTTTCTTGAGATTCTTCGCAGTTTATTGGACTCGTGTACTTTGTCTGCACCACAGAGGGACACTATTGTTGACATTTTCTTCGAGAAGCATTTGGGTCAACTGATCGAAGTTATAACAGCATCATGTCCTTCAGAAAATATTGCTGATGCAAGTTGCAAATCAATAGGTCCTGGACAAAGAGTTCAGTGTCAGAGTGGAACAAAGCCGGAGATATTATCAAACATATGTGAATTACTATGCTTTTGTGTCCTGCATCACCCATACAGGATAAAGTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATTTTGCTACTGACACGGAGAGCAGAAAGATACTTAGTTGTTGGTGCTGTTCGGTTTGTTCGAACTGTTCTCTCCCGCCATGATGAGCATCTGGTAAATTATTTTGTTAGGAATAATGTTCTCAAACCAATTATAGATGCCTTTGTTGCAAATGGCAATCGCTACAATCTGCTCAATTCTGCTGTTTTGGAACTTTTTGAGTATATTCGGAAGGAGAATCTGAAATTATTGCTGAAATATATAGTTGATACTTTCTGGGACCAGCTGGTGAAATTTGAATATCTGGTTTCAATTCACTCACTGAAAGTAAAATATGAGCAGTGTTTGGATAATGGTGGGGAAAAAAATGCTGCTACTGCAATGGACCTTCGAAGAAGAATTGATGAGCGTGCTCTGGAAAGAGAAGAAGAGCGCTACTTCAACGAGGATAGTGATGAGGAGGATATAGCTTCTGCATCTGTTTCACATAATCAGAAAGGACATCAACAGCCTATTCTTTCCAATGGAGTTACTGCAAGCTATTCACAGTCAAGTCCAAGGTCACTGGTTGACTATGATGATGATGAGGATGATGAAGATTACAAGCCACCACCAAGGAAGCAGCCAGAAGCTTCAGGGGAAGATGAAGGGATAATGGAGTCTCTCAGGCTGAAAAGGAAATTGCCTTCAAAGGATAAGGAGTCCGAACCTGTGAAGAAGCAGAAGTTATCAAAGAATTCAAAATCTAAAGATGGCGTTTTTGCTGCCTTGTGTTCAACATTGAGCCAAGCTGTGCTACCTAGTAAAAAATCTGCAATCAATGCTCATCCAGGTGCTCGGACAGTTGAGAGGAGGATGAGCTCAAGTGAAGACTATCAGGTAGAGGGACCAAATGTTTCTAGAAGCAGCTGTGATACTAGCAACATAGTAGCTGAAGATAATCATGTAGAGAAAGAAACTGCAGCCTCTAGAAGCCTTTCTGATTGTTTGCATGCAACATCAGATGACATACAGTTGGTGGGAGAGGAACGCCCATTGGTTCCTCCAAATTCTTCACCAGAGATGGCTGTGAATGGATCGTAA 2664 0.3983 MTALYLVSLLIGLQRVKVYRLNDDGKWDDQGTGHVTVDYLERSEELGLFVYDEEDNETILLHRISSDDIYRKQEDSIISWRDPEYATELALSFQEPSGCSYIWDHICNVQRNMHFNTLNSEPFQSVNSELRELPAVELSTLPLILKTVVDSGIADQLRLTELILNDQDFFRKLMKVFRICEDLENMDGLHMIFKIVKGIRLVCSLAVLLNSPPIFERIFKDEYIVDIIGALEYDPELPCVQHHRKFLNEHVVFKEAIPIKDPIALSKIHQTYRVGFLKDVVLARVLDEATSASLNSIIHGNNAFVISLLKDDSKFIQELFARLKFPTTSQETKKNLVYFLHEFCSVSKSLQMVQQLRLFRDLMNEGIFDIVTNVLQNQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGITLLGLLVKGMITDFGEHMHCQFLEILRSLLDSCTLSAPQRDTIVDIFFEKHLGQLIEVITASCPSENIADASCKSIGPGQRVQCQSGTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVIEKILLLTRRAERYLVVGAVRFVRTVLSRHDEHLVNYFVRNNVLKPIIDAFVANGNRYNLLNSAVLELFEYIRKENLKLLLKYIVDTFWDQLVKFEYLVSIHSLKVKYEQCLDNGGEKNAATAMDLRRRIDERALEREEERYFNEDSDEEDIASASVSHNQKGHQQPILSNGVTASYSQSSPRSLVDYDDDEDDEDYKPPPRKQPEASGEDEGIMESLRLKRKLPSKDKESEPVKKQKLSKNSKSKDGVFAALCSTLSQAVLPSKKSAINAHPGARTVERRMSSSEDYQVEGPNVSRSSCDTSNIVAEDNHVEKETAASRSLSDCLHATSDDIQLVGEERPLVPPNSSPEMAVNGS. 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00404 887 Gene3D - 13 129 IPR011993 -
Seca12g00404 887 MobiDBLite consensus disorder prediction 868 887 - -
Seca12g00404 887 MobiDBLite consensus disorder prediction 670 777 - -
Seca12g00404 887 MobiDBLite consensus disorder prediction 685 715 - -
Seca12g00404 887 Gene3D - 281 620 IPR011989 -
Seca12g00404 887 SUPERFAMILY PH domain-like 14 110 - -
Seca12g00404 887 MobiDBLite consensus disorder prediction 727 774 - -
Seca12g00404 887 Pfam Phosphatase 4 regulatory subunit 3 167 362 IPR006887 -
Seca12g00404 887 MobiDBLite consensus disorder prediction 818 833 - -
Seca12g00404 887 MobiDBLite consensus disorder prediction 802 833 - -
Seca12g00404 887 PANTHER ATP SYNTHASE GAMMA-RELATED 15 803 - -
Seca12g00404 887 SUPERFAMILY ARM repeat 294 628 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00404 Seca-Chr12 3524356 3545260 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00404 K17491 - gmx:100786790 1471.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00404 12 3524356 3545260 Seca12g00404 12 3524356 3545260 ECH