Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00403 ATGCATTCCTCGCTCTCACTCTCTCCCAGCTCCTCTGCCGCCACCATTTCCAGATCACACCACTCTTTTCCCATCACCACTGGCAGGCCTCTCAATCTCCGCTTCTGCGGTTTGAGGCGCGAGGCGTTAGGTTTAGGTTTTACCACTTCTCTCAACCGCCATCTTCAACCGCAGCTTCCCCGCCACCAACACTCCGCCACAGTATCCGCTGCGCTCTCCGGCAATGGCAGTGCTCCTAAATCCTTCGACTACGATTTGCTGATTATTGGCGCTGGCGTTGGCGGCCATGGCGCTGCGCTTCATGCTGTCGAGAAGGGTTTGAAAACAGCCATTGTCGAGGGAGACGTAGTGGGAGGAACGTGTGTAAACAGAGGCTGTGTTCCTTCGAAAGCTCTTTTGGCCGTCAGTGGTCGTATGCGGGAACTACAGAGCGATCATCACTTGAAGTCCTTGGGCTTACAAGTCTCTGCTGCTGGGTATGACAGACAAGGAGTCGCTGATCATGCTAATAACCTGGCTTCAAAAATCCGCAGTAATTTGACTAACTCACTAAAAGCGCTTGGAGTAGACATACTTACTGGGTTTGGAACTATATTGGGTCCTCAGAAGGTGAAAGTTGGCTCTTCAAACAGCATAGTAACTGCCAAAAATATCATCATTGCCACTGGTTCTGTTCCTTTCGTTCCTAAGGGCATTGAAATTGATGGGAAGACTGTCATTACCAGTGACCATGCACTCAAACTGGAGTCTGTTCCTGATTGGATAGCAATTGTAGGAAGTGGTTATATTGGCCTTGAATTCAGTGATGTATATACAGCACTTGGAAGTGAGGTTACCTTTATTGAAGCTTTAGATCAGCTTATGCCTGGATTTGATCCTGAAATCAGCAAGTTGGCTCTGAGGGTTCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCATCCAAGATCACACCTGCAAGGGATGGAAAACCTGTCTTGATTGAGCTTATTGATGCAAAGACTAAGGAACCAACGGACACTTTGGAGGTGGATGCTGCACTAATAGCAACTGGAAGGGCTCCATTCACACAAGGTCTCGGATTGGAGAATATTGATGTGGTAACACAGCGTGGTTTTGTTCCTGTGGATGAGCGCATGAGAGTAATTGATGCAAATGGCAAGCTGGTGCCTCATTTATACTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCTAGTGCACAAGGAATTTCAGTGGTTGAACAAGTCACCGGAAGGGATCACGTGCTCAATCATTTAAGTATCCCAGCTGCTTGTTTCACTCATCCTGAAATTAGCATGGTTGGATTGACGGAGCCTCAAGCAAGGGAGAAAGGAGAGAAAGAGGGGTTTGAAGTAAGTGTTGTCAAAACAAGTTTCAAAGCTAACACAAAAGCCTTAGCAGAAAACGAAGGGGAGGGACTTGCCAAGTTGATATACAGACCTGACAATGGAGAGATACTAGGAGTCCATATTTTTGGTTTACATGCAGCAGATCTCATCCATGAAGCATCCAATGCAATAGCATTAGGGACACGCATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTTTGTCTGAGGTTCTTGATGAGCTATTTAAATCAGCAAAGGTTAAAGCACAAGCTTCTAGCCCAGTAAGTGAACCAGTTGCAGTATAA 1704 0.4619 MHSSLSLSPSSSAATISRSHHSFPITTGRPLNLRFCGLRREALGLGFTTSLNRHLQPQLPRHQHSATVSAALSGNGSAPKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSDHHLKSLGLQVSAAGYDRQGVADHANNLASKIRSNLTNSLKALGVDILTGFGTILGPQKVKVGSSNSIVTAKNIIIATGSVPFVPKGIEIDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEISKLALRVLINPRNIDYHTGVFASKITPARDGKPVLIELIDAKTKEPTDTLEVDAALIATGRAPFTQGLGLENIDVVTQRGFVPVDERMRVIDANGKLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFEVSVVKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKLAVHAHPTLSEVLDELFKSAKVKAQASSPVSEPVAV. 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00403 567 Gene3D - 434 558 IPR016156 GO:0016491|GO:0050660
Seca12g00403 567 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 434 548 IPR016156 GO:0016491|GO:0050660
Seca12g00403 567 Gene3D - 84 422 IPR036188 -
Seca12g00403 567 Gene3D - 227 354 IPR036188 -
Seca12g00403 567 FunFam Putative dihydrolipoyl dehydrogenase 227 354 - -
Seca12g00403 567 SUPERFAMILY FAD/NAD(P)-binding domain 77 425 IPR036188 -
Seca12g00403 567 PANTHER DISULFIDE OXIDOREDUCTASE 80 551 - -
Seca12g00403 567 NCBIfam dihydrolipoyl dehydrogenase 84 554 IPR006258 GO:0004148|GO:0050660
Seca12g00403 567 PIRSF Hg-II_reductase_MerA 54 550 IPR001100 GO:0016491
Seca12g00403 567 Pfam Pyridine nucleotide-disulphide oxidoreductase 84 416 IPR023753 GO:0016491
Seca12g00403 567 PRINTS FAD-dependent pyridine nucleotide reductase signature 215 233 - -
Seca12g00403 567 PRINTS FAD-dependent pyridine nucleotide reductase signature 347 363 - -
Seca12g00403 567 PRINTS FAD-dependent pyridine nucleotide reductase signature 381 403 - -
Seca12g00403 567 PRINTS FAD-dependent pyridine nucleotide reductase signature 86 105 - -
Seca12g00403 567 PRINTS FAD-dependent pyridine nucleotide reductase signature 254 272 - -
Seca12g00403 567 PRINTS Pyridine nucleotide disulphide reductase class-I signature 117 132 - -
Seca12g00403 567 PRINTS Pyridine nucleotide disulphide reductase class-I signature 522 542 - -
Seca12g00403 567 PRINTS Pyridine nucleotide disulphide reductase class-I signature 85 107 - -
Seca12g00403 567 PRINTS Pyridine nucleotide disulphide reductase class-I signature 431 452 - -
Seca12g00403 567 PRINTS Pyridine nucleotide disulphide reductase class-I signature 500 515 - -
Seca12g00403 567 PRINTS Pyridine nucleotide disulphide reductase class-I signature 218 227 - -
Seca12g00403 567 PRINTS Pyridine nucleotide disulphide reductase class-I signature 254 279 - -
Seca12g00403 567 PRINTS Pyridine nucleotide disulphide reductase class-I signature 348 362 - -
Seca12g00403 567 PRINTS Pyridine nucleotide disulphide reductase class-I signature 396 403 - -
Seca12g00403 567 FunFam Dihydrolipoyl dehydrogenase 434 558 - -
Seca12g00403 567 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 435 546 IPR004099 -
Seca12g00403 567 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 118 128 IPR012999 GO:0016668
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00403 Seca-Chr12 3501353 3510071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00403 1 559 Acyl Lipid Metabolism Gene Families AT3G16950 83.156 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00403 K00382 - gmx:100782004 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00403 12 3501353 3510071 Seca12g00403 12 3501353 3510071 ECH