Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00394 ATGACCATCGACTTAGATTCGATCACTCGCAGAGTCGAGGTTGATAATCGCATTCCTCTCCGTTATTACTATCGGATTGCCGATAACCTCCTCAAGCAGGCAAGTATCTACCGGGAGGAGAAAAATATAGTTGACTTGTACATCATACTCCTTAGATATTTAAGTTTGGTTTCTGAAACGATACCATTTCATCGAGATTATCAAGCTTCACTTCCTAATGAAAGAGCAGCATACAAGAGGAGATCGCGACTTGTATTGGATGAGCTTGAGACTTTGAAGCCTGAATTTAAACGCCGGTTGGAAAAATTGAATGAATCACATGTAAAAGCTCCATTGCCTGAAGAAAATGGCTATGGGGCTTTGCAGAGTTCAGTGAATTCATCTTTGGAATGGCCAGCTGTGAATAAAAGTTATAACTCCATCATGGATTTTAAACAGCCTGCTGGATTGGGTTCACACTCTTCATGGAAATATAACAATAATAATATGTTATCTTCAAATTCCATGCCTATCGATAAGCAGTTTCAGAAGTTATCTCTTAGTCTACCTCCTCCAAAGAAGGAGACCTTGTCCAGACACTCATTTCTAGGACCGAATGGTCTTCGGGGCCAATGGCTTGGACCTAGTGCAGAAATAAAGGGTGTTTTGTTCAGCTTTGTTACTCTAAAATATAACTGTCCACACACTTACTATTTTGCTGTTCTTGCTGGTAGCCTGAATCAGGCTGGGCAATATGATCTTGTGTCAGTTAAGGATGATGATCAAGGACTGGGCACATCAACAATGGACTCAGTTCTCTCCTTGGATGATGGAAGATGGTCGCGTCCTACTGTTGAGTCCTGTTCTCCTGTTATAACTGAATCAAGGGAGGACCCCTTACAGTTGCTCAACATCAAGCAACCCATGCCTCCTCCTGTTCTTGCTCAGGTGTACCCAGAACATGCCCATATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCAACTAAATCTTCTCATGATTCTGAACTTGGTCCCACTAAATATCAACACTTACATATTCCTTTCAAAATGATGGAAGATTTTTTGAGACTGGCTTCAGAAAACACACGGAAGAACTTGGAGACATGTGGTGTTCTTGCAGGATCTCTGAAAAACAGGGTTTTCCATATCACAACTCTAATAATCCCAAAGCAGGAATCAACTTCAGACTCGGTAAGATAA 1206 0.4163 MTIDLDSITRRVEVDNRIPLRYYYRIADNLLKQASIYREEKNIVDLYIILLRYLSLVSETIPFHRDYQASLPNERAAYKRRSRLVLDELETLKPEFKRRLEKLNESHVKAPLPEENGYGALQSSVNSSLEWPAVNKSYNSIMDFKQPAGLGSHSSWKYNNNNMLSSNSMPIDKQFQKLSLSLPPPKKETLSRHSFLGPNGLRGQWLGPSAEIKGVLFSFVTLKYNCPHTYYFAVLAGSLNQAGQYDLVSVKDDDQGLGTSTMDSVLSLDDGRWSRPTVESCSPVITESREDPLQLLNIKQPMPPPVLAQVYPEHAHIPPSKVADPRPGPTKSSHDSELGPTKYQHLHIPFKMMEDFLRLASENTRKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSVR. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00394 401 SUPERFAMILY USP8 N-terminal domain-like 4 106 - -
Seca12g00394 401 FunFam AMSH-like ubiquitin thioesterase 3 1 116 - -
Seca12g00394 401 PANTHER AMSH-LIKE PROTEASE 3 400 - -
Seca12g00394 401 Coils Coil 86 106 - -
Seca12g00394 401 Gene3D Cytidine Deaminase, domain 2 329 401 - -
Seca12g00394 401 Pfam USP8 dimerisation domain 4 100 IPR015063 -
Seca12g00394 401 Gene3D - 2 116 - -
Seca12g00394 401 MobiDBLite consensus disorder prediction 317 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00394 Seca-Chr12 3441055 3444954 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00394 K11866 - gmx:100812784 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00394 12 3441055 3444954 Seca12g00394 12 3441055 3444954 ECH