Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00379 ATGGGTGTTCTCACATTCCAGGATGAAACCACCTCTACCGTAGCTCCTGCTAAGCTTTACAAAGCTCTGGTAAAGGATGCTGATGACATCCTCCCAAAGGCTGTTGAGGCCATCCAGAGTGTTGAAACCGTTGAGGGAAATGGTGGCCCCGGAACCATCAAGAAGCTCACTTTCGTTGAGGGAGAAACCAAGTATGTGTTGCACAAAATTGAAGCAATTGATGAGGCTAACTTTGGATATAACTACAGCATTGTTGGGGGAGTGGGCCTTCCAGAAACAGTGGAGAAGGTCTCTTTCGAGGCCCAATTGGTTGCTGGGCCCAATGGAGGTTCTATTGGGAAGCTCACTGTTAAGTACCAAACCAAAGGTGGTAAAACGAGCTATGTGCTGCACAAAGTGGAAGAAATAGATGAGGCAAACTTGGGATACAACTATAGCTTTGTTGGAGGGAGTGGCTTAGAGGAGATTTTGGAGAAAGTGTCATTCGAGACCAAGGTGTTGCCTGGCCCCAATGGTGGATCCGTCGGGAGAGTCTCCGTCACATACCATACCAAAGGCGACGCTGTTTTGTCGGAAGAGGTGCGTGAGAGTACAAAGGCTAAGGGAACTGCACTTTTCAAGGCTGTTGAGGGCTACCTTTTGGCTAATCCCAATTACTAG 660 0.4818 MGVLTFQDETTSTVAPAKLYKALVKDADDILPKAVEAIQSVETVEGNGGPGTIKKLTFVEGETKYVLHKIEAIDEANFGYNYSIVGGVGLPETVEKVSFEAQLVAGPNGGSIGKLTVKYQTKGGKTSYVLHKVEEIDEANLGYNYSFVGGSGLEEILEKVSFETKVLPGPNGGSVGRVSVTYHTKGDAVLSEEVRESTKAKGTALFKAVEGYLLANPNY. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00379 219 SUPERFAMILY Bet v1-like 122 219 - -
Seca12g00379 219 PANTHER - 127 218 - -
Seca12g00379 219 SUPERFAMILY Bet v1-like 2 125 - -
Seca12g00379 219 Gene3D - 125 219 IPR023393 -
Seca12g00379 219 Gene3D - 2 124 IPR023393 -
Seca12g00379 219 FunFam Major pollen allergen Bet v 1-A 1 124 - -
Seca12g00379 219 PRINTS Major pollen allergen Bet V1 signature 64 83 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00379 219 PRINTS Major pollen allergen Bet V1 signature 83 96 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00379 219 PRINTS Major pollen allergen Bet V1 signature 108 124 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00379 219 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00379 219 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00379 219 CDD Bet_v1-like 5 124 - -
Seca12g00379 219 FunFam Major pollen allergen Bet v 1-A 125 219 - -
Seca12g00379 219 Pfam Pathogenesis-related protein Bet v 1 family 1 123 IPR000916 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00379 Seca-Chr12 3300048 3309007 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00379 - - pcin:129295953 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00379 12 3300048 3309007 Seca12g00379 12 3300048 3309007 ECH