Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00377 ATGGGTGTTATCACTTCTGAAAGCGAGCACATTTCCCCTGTCTCTGCTGCAAGACTATACAAAGCCATTGTCCTAGATGCTAGCAATGTCTTCCCAAAAGCTTTACCAAATTTCATTAAGAGTGCTGAAACCCTTGAAGGAGATGGAGGGCCTGGAACCATCAAGAAGCTTACTCTTGCTGAAGGTTTAGGCTATGTGAAGCACCATGTAGATGCAATTGACACAGAAAACTTTGTGTACAACTATAGTGTAATTGAAGGTTCTGCTTTGACAGAGCCACTGGAGAAAATCTGTTATGAGTACAAATTGGTGCCAACCCCTGAAGGAGGATGCATTGTGAAGTCAGCAAGCAAATACTACACCAAAGGGGATGAACAGCTTGCAGAAGAATACGTGAAGGCTGGGAAAGAGAGATCTGCTGGCTTCACCAAGGCTGTTGAGGCTTACCTTGTGTCTAATCCTGATTACAACTAA 474 0.4367 MGVITSESEHISPVSAARLYKAIVLDASNVFPKALPNFIKSAETLEGDGGPGTIKKLTLAEGLGYVKHHVDAIDTENFVYNYSVIEGSALTEPLEKICYEYKLVPTPEGGCIVKSASKYYTKGDEQLAEEYVKAGKERSAGFTKAVEAYLVSNPDYN. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00377 157 Gene3D - 1 157 IPR023393 -
Seca12g00377 157 SUPERFAMILY Bet v1-like 2 155 - -
Seca12g00377 157 Pfam Pathogenesis-related protein Bet v 1 family 2 153 IPR000916 GO:0006952
Seca12g00377 157 FunFam Major pollen allergen Bet v 1-A 1 157 - -
Seca12g00377 157 PRINTS Major pollen allergen Bet V1 signature 142 152 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00377 157 PRINTS Major pollen allergen Bet V1 signature 108 124 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00377 157 PRINTS Major pollen allergen Bet V1 signature 83 96 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00377 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00377 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00377 157 PRINTS Major pollen allergen Bet V1 signature 64 83 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00377 157 PANTHER - 1 155 - -
Seca12g00377 157 CDD Bet_v1-like 5 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00377 Seca-Chr12 3287876 3288830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00377 - - gmx:100306363 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00377 12 3287876 3288830 Seca12g00377 12 3287876 3288830 ECH