Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00326 ATGAGTCAGGAATCGTTTATATATAGCTTTGTGGCTCGGGGGACGATGGTGTTAGGTGAGTACACAGAGTTCACCGGTAACTTCCCAGCGATTGCAGCTCAGTGTCTCCAGAAACTACCTTCCTCTAACAACAAGTTCACCTACAATTGTGACCACCACACCTTCAATTTTCTAGTCGAAGATGGTTACGCTTACTGTGTTGTTGCCAAGGAATCTGTTAGCAAGCAGATCTCTATTGCTTTCCTAGAACGTGTCAAAGCAGATTTTAAGAAAAGATATGGTGGTGGAAAAGCTGATACAGCTGTTGCCAAAAGTCTCAACAAGGAGTTTGGGTATACTCATTTCTTTCCTAGCCCTTCATGA 363 0.4325 MSQESFIYSFVARGTMVLGEYTEFTGNFPAIAAQCLQKLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERVKADFKKRYGGGKADTAVAKSLNKEFGYTHFFPSPS. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00326 120 SMART Longin_2 31 113 IPR010908 -
Seca12g00326 120 Pfam Regulated-SNARE-like domain 32 110 IPR010908 -
Seca12g00326 120 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Seca12g00326 120 SUPERFAMILY SNARE-like 6 111 IPR011012 -
Seca12g00326 120 FunFam Vesicle-associated membrane protein 724 1 114 - -
Seca12g00326 120 CDD Longin 7 111 IPR010908 -
Seca12g00326 120 Gene3D Longin domain 1 114 - -
Seca12g00326 120 PANTHER SNARE PROTEINS 3 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00326 Seca-Chr12 2921136 2922839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00326 1 111 Miscellaneous Gene Families AT2G32670 76.577 5.59e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00326 K08511 - gmx:100781950 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00326 12 2921136 2922839 Seca12g00326 12 2921136 2922839 ECH
Seca12g00326 12 2921136 2922839 Seca6g03974 6 107448836 107450469 PCT