Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03496 ATGAGCTCGTCGTGTCGCAGAAAGTCCCTCTCCGATAACACTACCCCTTCTTCTCTTTCCCCTAACCCTATTAAACCCAACACTTCTTCTGCATTCAATAAACCTCCTACCTCTCCAAACGGCACCGTTTTGAAGAGGAAGAGACCAGCGTGGCTTGATATACCCGTTAGTTCTCTCACCTTTGGGGTTCCGACAACGCTGTCGGCGATGGCAAGGGATGGCTTTGAGGGTGAGGGAGATGGGTTTTCTGTGTACTGCAAAAGAGGAAGGAGGGAGTACATGGAGGACCGTCACACCGCTAGGGATAATCTACACGGAGAACACAAACTGGATTTTTTTAGCATATTTGATGGGCACAGAGGTGCAAAAGCAGCAGAGTTTGCTGCAAATTACTTAGAAAAGAATGTCTTGGATGAGGTGATCATGAGTGATGATGATGATATTGAGCAGGCAGTGAAGTGTGGTTACCTCATCACTGATTCAGATTTCTTGAAAGATGATCTCCATGGTGGCTTATGTTGTGTAATAGCTTTGATTAGAAATGGTAACCTTGTTGTATCCAATACTGGTGATTGCCGAGCTTTCATAAGCAGAGGAGGTGTTGCTGAGGCCCTAACATCTGATCATAGACCTTCAAGGGAAGATGAAAGAGACAGAATTGAGACCCTGGGTGGCTATGTTGATTTATGCCGTGGTGTTTGGAGGATCCAAGGATCTCTGGCTGTATCCAGGGGAATTGGAAAGGGATGTATGAGAGGGAAAGGAGGCCCTGAGAATGCAAGTGCACCTACAAAGGTGTGA 801 0.4644 MSSSCRRKSLSDNTTPSSLSPNPIKPNTSSAFNKPPTSPNGTVLKRKRPAWLDIPVSSLTFGVPTTLSAMARDGFEGEGDGFSVYCKRGRREYMEDRHTARDNLHGEHKLDFFSIFDGHRGAKAAEFAANYLEKNVLDEVIMSDDDDIEQAVKCGYLITDSDFLKDDLHGGLCCVIALIRNGNLVVSNTGDCRAFISRGGVAEALTSDHRPSREDERDRIETLGGYVDLCRGVWRIQGSLAVSRGIGKGCMRGKGGPENASAPTKV. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03496 266 CDD PP2Cc 81 247 IPR001932 -
Seca11g03496 266 ProSiteProfiles PPM-type phosphatase domain profile. 81 266 IPR001932 -
Seca11g03496 266 Pfam Protein phosphatase 2C 82 252 IPR001932 -
Seca11g03496 266 SMART PP2C_4 74 266 IPR001932 -
Seca11g03496 266 Gene3D - 76 264 IPR036457 -
Seca11g03496 266 PANTHER PROTEIN PHOSPHATASE 2C 33 252 IPR015655 GO:0004722|GO:0006470
Seca11g03496 266 MobiDBLite consensus disorder prediction 1 46 - -
Seca11g03496 266 MobiDBLite consensus disorder prediction 1 40 - -
Seca11g03496 266 SUPERFAMILY PP2C-like 82 252 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03496 Seca-Chr11 87352120 87353650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03496 16 252 PP2C-type Phosphatase Gene Family AT2G30020 56.911 3.20e-86 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03496 K17506 - gmx:100797934 359.377