Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05326 ATGAGCTCCACGGCATTCAGTTCGATTTGTTTTAACAGAGGCCACTGTTGGATGAAGAAGGACTTGAGAAAGCAACGGTATGGGAAGCCACTTGTTAAGTGTTTGATAAAAAGTGGAAACACAACTTCACAAAAAACTGTCCGCGTTGGTGTTCTTGGAGCTAGTGGCTACACTGGTTCAGAGGTTCTTCGGCTTTTGGCAAATCATCCAGAATTTGGGGTTGCACTGCTGACTGCTGATCGGAAAGCTGGGCAGCCAATCTCATCTGTATTCCCTCATTTGGGGCCACAGGACTTACCTGATTTGATTGCAATAAAGGATGCAAATTTTTCTGATGTGGATGCCGTATTTTGTTGTTTGCCGCATGGAACCACTCAGGAAATAATTAAAGGCCTTCCAAAGCACTTGAAGATTGTTGATCTTTCTGCAGATTTTCGTCTAAGAGATATTTCTGAGTATGAAGAGTGGTATGGTCAGCCACACAGAGCACCGGATTTGCAGAAAGAAGCTATATATGGTTTGACGGAGGCTTTGAGGGAGGAGATAAAGAATGCACGCCTAGTTGCTAATCCTGGTTGCTATCCAACTTCAATTCAACTTCCTCTCGTTCCACTGATAAAGGCTAATCTTATTCAGATTAGTAATATTATTATTGATGCTAAATCTGGTGTGAGTGGAGCAGGGCGTAGTGCCAAAGAAAATTTGTTGTTCACTGAAGTAACTGAGGGTATCAATTCTTATGGTGTTACTAGGCATCGCCATGTTCCAGAAATTGAACAGGGACTCACTGATGCTGCAAGTGCAAAAGTAACCGTTAGTTTTACCCCACACTTGATTCCAATGAGCCGGGGCATGCAATCAACTATTTATGTTGAAATGGCTCCAGGAGTAAGAATTGAGGACTTGTATGAGCAACTGAAGCTCTCATATGAGGATGAAAAGTTTGTTGTACTGTTGGAAAATGGAGTCATTCCTAGAACTCATAGCGTTAAAGGAACTAATTATTGTTTAATCAATGTGTTTCCTGACCGAATCCCTGGAAGAGCAATCATTATATCTGTGATTGATAACTTAGTGAAGGGAGCTTCAGGGCAAGCTTTACAAAACCTTAATTTGATAATGGGATTTCCAGAAAACTTGGGGCTTCATTACCTGCCTCTGTTTCCTTAG 1170 0.4171 MSSTAFSSICFNRGHCWMKKDLRKQRYGKPLVKCLIKSGNTTSQKTVRVGVLGASGYTGSEVLRLLANHPEFGVALLTADRKAGQPISSVFPHLGPQDLPDLIAIKDANFSDVDAVFCCLPHGTTQEIIKGLPKHLKIVDLSADFRLRDISEYEEWYGQPHRAPDLQKEAIYGLTEALREEIKNARLVANPGCYPTSIQLPLVPLIKANLIQISNIIIDAKSGVSGAGRSAKENLLFTEVTEGINSYGVTRHRHVPEIEQGLTDAASAKVTVSFTPHLIPMSRGMQSTIYVEMAPGVRIEDLYEQLKLSYEDEKFVVLLENGVIPRTHSVKGTNYCLINVFPDRIPGRAIIISVIDNLVKGASGQALQNLNLIMGFPENLGLHYLPLFP. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05326 389 Gene3D - 48 375 - -
Seca10g05326 389 PANTHER N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED 42 389 - -
Seca10g05326 389 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 193 357 - -
Seca10g05326 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 218 IPR036291 -
Seca10g05326 389 Pfam Semialdehyde dehydrogenase, NAD binding domain 48 185 IPR000534 GO:0016620|GO:0051287
Seca10g05326 389 NCBIfam N-acetyl-gamma-glutamyl-phosphate reductase 47 389 IPR000706 GO:0003942|GO:0006526|GO:0070401
Seca10g05326 389 Gene3D Dihydrodipicolinate Reductase; domain 2 191 357 - -
Seca10g05326 389 SMART Semialdhyde_dh_3 48 185 IPR000534 GO:0016620|GO:0051287
Seca10g05326 389 Hamap N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 47 383 IPR000706 GO:0003942|GO:0006526|GO:0070401
Seca10g05326 389 ProSitePatterns N-acetyl-gamma-glutamyl-phosphate reductase active site. 188 204 IPR023013 GO:0003942
Seca10g05326 389 FunFam N-acetyl-gamma-glutamyl-phosphate reductase 191 357 - -
Seca10g05326 389 Pfam Semialdehyde dehydrogenase, dimerisation domain 202 360 IPR012280 GO:0008652|GO:0016620|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05326 Seca-Chr10 121440349 121454158 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05326 K00145 - gmx:100801527 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05326 10 121440349 121454158 Seca10g05326 10 121440349 121454158 ECH