Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05054 ATGGTGGTACACTCTCCTGTTATAGCTAAGAGGGTGTGGAATGTGTTGAGGATCACCTTCTTCATGATCAGGAAGGGATTGATATCAAAGAGGAAGCTGATTATGGACATGAACTTGATGATGAAGAAAGGGAAACTGCTCAGAAAATCTCTAAGCAATCTCATGTCATCACATCATCATCATCATCATCATTCAAAGAGTTTGGCACATGGTGGTTATGGCATACAGGAATATGAATTTTCTTGCAGTAATAGTCCAAATCCTGTTTTTTCCCATGTTCCAAAGAGAAAGCACCATTTCAACTTCCCCTGCATCAACTCCCCTGAGGTTATTGAAGTGGAAGAAGTAGATGATGATGAATTGGTTGGTGAACAAGTTCCTAAGGCTGTGGTTTTGGTGCCCAAGACCCCTGAATACACATTCAACCTTAGGTTTGATGCATCTGATTTTGCTTCTGGGGAGAGAAAGAGTAGTCCACTCCTCTCACCATTCTCTGTGAGGATATCCAATTACTCATCTGAGGATGACATTGAAGAAGGTGGAAATGGTCAAGTTGATGATCAAGCTGAGGATTTCATCAGAAGGTTCTATGAACAGCTAAGAATGCAAAGCCGCATGCAGTTATTGCAGTACCAAGAGATCTAA 645 0.414 MVVHSPVIAKRVWNVLRITFFMIRKGLISKRKLIMDMNLMMKKGKLLRKSLSNLMSSHHHHHHHSKSLAHGGYGIQEYEFSCSNSPNPVFSHVPKRKHHFNFPCINSPEVIEVEEVDDDELVGEQVPKAVVLVPKTPEYTFNLRFDASDFASGERKSSPLLSPFSVRISNYSSEDDIEEGGNGQVDDQAEDFIRRFYEQLRMQSRMQLLQYQEI. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05054 214 Pfam Cotton fibre expressed protein 183 213 IPR008480 -
Seca10g05054 214 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 5 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05054 Seca-Chr10 116078607 116079251 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05054 - - pvu:PHAVU_004G067900g 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05054 10 116078607 116079251 Seca10g05054 10 116078607 116079251 ECH