Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04969 ATGGAAGCTGCATTATGCAGTCCACTTGCCCTTTCACCCAACCATGTATTCAATGCAGCGAATCCTAGAGATAAAAATTTTCCTTTCAAATATAGCAGAGATCGGAGTATTGTAATGACAGTGGCAGCCACTGTATTAGGAAAAGGTGGGGGGTTGTTGGAGAGGCCAACCATAGAGACAACATCACCTGGTCGGGAATCTGAATTTGACTTAAGGAAATCACGGAAAACATCCCCACCTTACCGAGTATTGCTGCACAATGACAACTATAATAAGCGGGAATATGTGGTGCAAGTGCTGATGAAGGTGATACCTGGAATGACACTTGATAATGCAGTTAACATCATGCAGGAAGCACATTATAATGGAATGGCAGTGGTCATCATCTGTGCTCAAGTGGATGCTGAAGATCACTGCATGCAGTTGAGAGGAAACGGCCTTTTAAGTTCAATTGAGCCAGCTGATGGTGGGTGTTGA 477 0.4403 MEAALCSPLALSPNHVFNAANPRDKNFPFKYSRDRSIVMTVAATVLGKGGGLLERPTIETTSPGRESEFDLRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPADGGC. 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04969 158 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC 25 158 IPR022935 GO:0006508
Seca10g04969 158 Gene3D - 75 153 IPR014719 -
Seca10g04969 158 SUPERFAMILY ClpS-like 75 152 IPR014719 -
Seca10g04969 158 FunFam ATP-dependent Clp protease adapter protein CLPS1, chloroplastic 75 153 - -
Seca10g04969 158 Hamap ATP-dependent Clp protease adapter protein ClpS [clpS]. 62 155 IPR022935 GO:0006508
Seca10g04969 158 Pfam ATP-dependent Clp protease adaptor protein ClpS 76 144 IPR003769 GO:0030163
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04969 Seca-Chr10 114527723 114530105 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04969 K06891 - gmx:100306117 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04969 10 114527723 114530105 Seca10g04969 10 114527723 114530105 ECH