Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04953 ATGTTGCTTCTAGTTCTTCCGTTGACTCATCCTCCGTTTTGCCAGTCAGTGGCAACGTTTATCCAGATGGTTTCTTCCTGCAGGTTGTATTTCACACATTTACGTGTTGGAAATCCTCCAAAACGTTATTTTCTTGACGTGGATACAGGGAGTGACTTAACATGGATTCAGTGTGATGCTCCATGCAGAAGTTGTGCCAAGGGAGCACATGTCCCATACAAGCCAGCAAGATCCAATATAGTGCCATCTATGGACTCTCTCTGCTTGGAAGTTCAGAAAAATCAGAGGAATGGATATGATGAAATTTTCCAACAGTGTGACTATGAAATTCAATATGCAGATCACAGTTCTTCCTTGGGGGTTCTTATTAGAGATGACCTTCATCTTATGACTACTAATGGTTCCAAAACCAAAGTAAATTTTGTTTTTGGGTGTGGATATGATCAAGAGGGCTTACTTTTGAACACATTGGCAAAAACAGATGGAATCATTGGACTGGGCAGGGCAAAAGTCAGCCTACCTTACCAGTTGGCAAGTAAAGGGCTTATTAAGAACATGGTTGGTCATTGCCTAAGCAATGATGCTGTTGGTGGTGGATACATGTTCTTGGGTGATGATTTTGTGCCATATTGGGGTATGACGTGGGTGCCCATGGCCTATACCCACACTACAGATTTATACCAAACTGAAATTCTTGGAATAAATTATGGAAATCGACTACTCAGTTTTGATGGCCACAGCAAAGTAGGAAAGGTGGTTTTTGATAGTGGCAGTTCTTATACGTATTTTCCAAAAGAGGCATACTCAGATCTTGTTGCTTCTCTTAATGAAGTTTCTGGGATGGGGCTCATTCATGATGATTCAGATCCAACTTTACCCATTTGCTGGCAAGCTAATTTCCCAATCAAATCTGTCAAAGATGTCAAGGATTTCTTCAAGACCGTAACTCTTCGTTTTGGAAGCAAGTGGTGGATTTTGTCCACATTGTTTCAGATACCTCCAGAGGGTTACTTGATTATTAGTAACAAAGGCAATGTGTGCTTAGCTATCCTTGATGGTAGCAATGTAAATGATGGATCCTCAATTATACTTGGAGACGTTTCATTGAGAGGACATTTGGTTGTGTATGACAATGTGAACCAGAGAATTGGTTGGGAGAGAGCAGATTGTGGCATGCCAAGCAGAAGATTCAGAAAGATCCACGATTTCTCCACTGATAGCATGTTATAA 1230 0.4098 MLLLVLPLTHPPFCQSVATFIQMVSSCRLYFTHLRVGNPPKRYFLDVDTGSDLTWIQCDAPCRSCAKGAHVPYKPARSNIVPSMDSLCLEVQKNQRNGYDEIFQQCDYEIQYADHSSSLGVLIRDDLHLMTTNGSKTKVNFVFGCGYDQEGLLLNTLAKTDGIIGLGRAKVSLPYQLASKGLIKNMVGHCLSNDAVGGGYMFLGDDFVPYWGMTWVPMAYTHTTDLYQTEILGINYGNRLLSFDGHSKVGKVVFDSGSSYTYFPKEAYSDLVASLNEVSGMGLIHDDSDPTLPICWQANFPIKSVKDVKDFFKTVTLRFGSKWWILSTLFQIPPEGYLIISNKGNVCLAILDGSNVNDGSSIILGDVSLRGHLVVYDNVNQRIGWERADCGMPSRRFRKIHDFSTDSML. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04953 409 FunFam Aspartyl protease APCB1 210 396 - -
Seca10g04953 409 Pfam Xylanase inhibitor N-terminal 30 205 IPR032861 -
Seca10g04953 409 SUPERFAMILY Acid proteases 26 390 IPR021109 -
Seca10g04953 409 Gene3D Acid Proteases 211 392 IPR021109 -
Seca10g04953 409 PRINTS Pepsin (A1) aspartic protease family signature 36 56 IPR001461 GO:0004190|GO:0006508
Seca10g04953 409 PRINTS Pepsin (A1) aspartic protease family signature 362 377 IPR001461 GO:0004190|GO:0006508
Seca10g04953 409 PRINTS Pepsin (A1) aspartic protease family signature 252 263 IPR001461 GO:0004190|GO:0006508
Seca10g04953 409 Gene3D Acid Proteases 13 205 IPR021109 -
Seca10g04953 409 PANTHER ASPARTYL PROTEASES 25 384 IPR001461 GO:0004190|GO:0006508
Seca10g04953 409 Pfam Xylanase inhibitor C-terminal 239 386 IPR032799 -
Seca10g04953 409 ProSiteProfiles Peptidase family A1 domain profile. 30 386 IPR033121 -
Seca10g04953 409 FunFam Aspartyl protease family protein 16 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04953 Seca-Chr10 114087339 114092458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04953 30 390 Miscellaneous Gene Families AT1G77480 43.923 1.62e-101 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04953 - - cam:101497154 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04953 10 114087339 114092458 Seca10g04953 10 114087339 114092458 ECH