Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04951 ATGGCTATGGTGGACCAACCTCTGTATCCGATTGCGGTTCTGATCGATGAGTTGAAGAACGAGGATATTCAGCTGAGGCTGAACTCGATCCGCAGGCTTTCCACGATCGCGCGTGCGCTGGGGGAAGAGAGGACCAGGAAGGAGCTGATTCCTTTTCTGAGTGAGAACAACGATGATGACGATGAGGTGCTTCTCGCAATGGCGGATGAATTAGGGGTTTTTATTCCCTACGTTGGGGGCGTGGAGCATGCTAACGCGCTGCTTCCTCCGTTGGAAACTCTCTGCACCGTTGAGGAAACTTGTGTCAGGGACAAATCAGTGGAGTCACTGTGTAGAATTGGAGCTCAGATGAGAGAACAAGACTTGGTTGAACACTTCATTCCTTTAGTTAAGAGGCTGGCTGCTGGTGAGTGGTTCACTGCACGGGTTTCCTCATGCGGGTTGTTCCATATTGCTTATCCTAGTGCACCAGAGGCAGTGAAGACTGAGCTGAGAGCCATATATGGTCAGCTGTGTCAAGATGATATGCCCATGGTTAGGAGATCTGCTGCCACCAACCTGGGAAAATATGCTGCTACTGTTGAAGCTGCTCACTTGAAAACCGACATCATGTCTGTATTCGAGGATCTCACACAGGATGATCAAGATTCTGTTCGGCTTCTTGCTGTTGAGGGATGTGCAGCTCTTGGAAAATTGTTGGAGCCTCAAGATTGTGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCGCAGGATAAGTCATGGCGTGTTCGTTACATGGTTGCCAATCAACTATATGAGCTATGTGAGGCTGTTGGACCTGACCCCACCAGGACGGAATTGGTTCCTGCATATGTTCGGCTGCTGCGTGATAATGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTGACTAAGTTTTCCCGCATATTAAATCCTGAACTTGCCATTCAGCATATACTACCATGTGTGAAGGAGTTATCGTCAGATTCATCTCAACATGTGCGCTCTGCATTGGCTTCAGTGATAATGGGAATGGCACCAGTGTTAGGGAAGGACGCAACAATTGAGCAACTTCTTCCTATTTTCCTTTCTCTTTTGAAAGATGAGTTTCCTGATGTCAGACTAAATATTATCAGCAAGCTTGATCAAGTGAACCAGGTTATTGGTATTGATCTGTTATCTCAATCTCTGTTACCAGCTATTGTTGAGCTTGCTGAGGATCGGCACTGGAGAGTTCGACTTGCAATTATAGAATATATACCCTTATTAGCAAGTCAATTGGGTGTAGGTTTTTTTGATGATAAGCTTGGAGCTCTTTGCATGCAATGGCTGAAGGACAAGGTATACTCAATCCGTGATGCAGCCGCTAATAACATCAAACGCTTGGCAGAAGAATTTGGACCAGATTGGGCAATGCAGCACATTATTCCCCAGGTTTTTTTAGCACATGAACCTAATTTCTTGGTTTTGGACATGGTTAACGATCCACATTATCTGTATCGGATGACAATTCTACAAGCAATTTCTCTGTTAGCTCCTGTTCTGGGCTCGGAGATTACTTCTTCAAAGCTGCTCCCTCTGGTCATTAATGCATCAAAAGATAGGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTATCATTCCAATTGTTGATCAGTCTGTTGTTGAGAATACCATCCGTCCCTGTCTGGTTGAGCTCAGTGAGGATCCAGATGTTGATGTTAGGTTTTTCGCTTCCCAAGCGCTGCAATCTAGTGATCAAGTCAAGATGTCCAGCTAG 1794 0.4537 MAMVDQPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMADELGVFIPYVGGVEHANALLPPLETLCTVEETCVRDKSVESLCRIGAQMREQDLVEHFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPEAVKTELRAIYGQLCQDDMPMVRRSAATNLGKYAATVEAAHLKTDIMSVFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFSRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNIKRLAEEFGPDWAMQHIIPQVFLAHEPNFLVLDMVNDPHYLYRMTILQAISLLAPVLGSEITSSKLLPLVINASKDRVPNIKFNVAKVLQSIIPIVDQSVVENTIRPCLVELSEDPDVDVRFFASQALQSSDQVKMSS. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04951 597 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Seca10g04951 597 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Seca10g04951 597 Pfam HEAT repeats 361 460 - -
Seca10g04951 597 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 2 591 - -
Seca10g04951 597 ProSiteProfiles HEAT repeat profile. 525 563 IPR021133 -
Seca10g04951 597 SUPERFAMILY ARM repeat 8 589 IPR016024 -
Seca10g04951 597 Gene3D - 2 589 IPR011989 -
Seca10g04951 597 Pfam HEAT repeat 242 270 IPR000357 GO:0005515
Seca10g04951 597 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Seca10g04951 597 ProSiteProfiles HEAT repeat profile. 564 597 IPR021133 -
Seca10g04951 597 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Seca10g04951 597 ProSiteProfiles HEAT repeat profile. 164 202 IPR021133 -
Seca10g04951 597 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Seca10g04951 597 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Seca10g04951 597 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 4 595 - -
Seca10g04951 597 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04951 Seca-Chr10 114041947 114052184 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04951 K03456 - gmx:100799440 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04951 10 114041947 114052184 Seca10g04951 10 114041947 114052184 ECH